The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

coda4microbiome: Compositional Data Analysis for Microbiome Studies

Functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.

Version: 0.2.4
Depends: R (≥ 3.5.0)
Imports: corrplot, glmnet, plyr, pROC, ggpubr, ggplot2, ComplexHeatmap, circlize, survival, survminer
Suggests: rmarkdown
Published: 2024-07-17
DOI: 10.32614/CRAN.package.coda4microbiome
Author: Malu Calle ORCID iD [aut], Toni Susin ORCID iD [aut, cre], Meritxell Pujolassos ORCID iD [aut]
Maintainer: Toni Susin <toni.susin at upc.edu>
BugReports: https://github.com/malucalle/coda4microbiome/issues
License: MIT + file LICENSE
URL: https://malucalle.github.io/coda4microbiome/
NeedsCompilation: no
CRAN checks: coda4microbiome results

Documentation:

Reference manual: coda4microbiome.pdf

Downloads:

Package source: coda4microbiome_0.2.4.tar.gz
Windows binaries: r-devel: coda4microbiome_0.2.4.zip, r-release: coda4microbiome_0.2.4.zip, r-oldrel: coda4microbiome_0.2.4.zip
macOS binaries: r-release (arm64): coda4microbiome_0.2.4.tgz, r-oldrel (arm64): coda4microbiome_0.2.4.tgz, r-release (x86_64): coda4microbiome_0.2.4.tgz, r-oldrel (x86_64): coda4microbiome_0.2.4.tgz
Old sources: coda4microbiome archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=coda4microbiome to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.