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cometExactTest: Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm

An algorithm for identifying combinations of mutually exclusive alterations in cancer genomes. CoMEt represents the mutations in a set M of k genes with a 2^k dimensional contingency table, and then computes the tail probability of observing T(M) exclusive alterations using an exact statistical test.

Version: 0.1.5
Depends: R (≥ 3.4.0)
Imports: dplyr
Published: 2018-01-29
DOI: 10.32614/CRAN.package.cometExactTest
Author: Max Leiserson [aut, cre], Hsin-Ta Wu [aut], Fabio Vandin [ctb], Vivian Hsiao [ctb], Benjamin Raphael [ctb]
Maintainer: Max Leiserson <mdml at cs.umd.edu>
License: MIT + file LICENSE
URL: http://compbio.cs.brown.edu/projects/comet, https://www.r-project.org
NeedsCompilation: yes
Citation: cometExactTest citation info
CRAN checks: cometExactTest results

Documentation:

Reference manual: cometExactTest.pdf

Downloads:

Package source: cometExactTest_0.1.5.tar.gz
Windows binaries: r-devel: cometExactTest_0.1.5.zip, r-release: cometExactTest_0.1.5.zip, r-oldrel: cometExactTest_0.1.5.zip
macOS binaries: r-release (arm64): cometExactTest_0.1.5.tgz, r-oldrel (arm64): cometExactTest_0.1.5.tgz, r-release (x86_64): cometExactTest_0.1.5.tgz, r-oldrel (x86_64): cometExactTest_0.1.5.tgz
Old sources: cometExactTest archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.