The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Provides a comprehensive framework for time series omics analysis, integrating changepoint detection, smooth and shape-constrained trends, and uncertainty quantification. It supports gene- and transcript-level inferences, p-value aggregation for improved power, and both case-only and case-control designs. It includes an interactive 'shiny' interface. The methods are described in Yates et al. (2024) <doi:10.1101/2024.12.22.630003>.
Version: | 0.1.3 |
Depends: | R (≥ 3.5) |
Imports: | bslib, cli, dplyr, edgeR, ggplot2, grDevices, magrittr, matrixStats, mgcv, mvnfast, parallel, pbmcapply, purrr, RColorBrewer, rlang, scam, shiny, shinyjs, stats, stringr, tidyr, tximport |
Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
Published: | 2025-03-13 |
DOI: | 10.32614/CRAN.package.cpam |
Author: | Luke Yates |
Maintainer: | Luke Yates <luke.yates at utas.edu.au> |
BugReports: | https://github.com/l-a-yates/cpam/issues |
License: | GPL (≥ 3) |
URL: | https://l-a-yates.github.io/cpam/, https://github.com/l-a-yates/cpam |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | cpam results |
Reference manual: | cpam.pdf |
Vignettes: |
cpam (source, R code) |
Package source: | cpam_0.1.3.tar.gz |
Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: cpam_0.1.3.zip |
macOS binaries: | r-devel (arm64): cpam_0.1.3.tgz, r-release (arm64): cpam_0.1.3.tgz, r-oldrel (arm64): cpam_0.1.3.tgz, r-devel (x86_64): cpam_0.1.3.tgz, r-release (x86_64): cpam_0.1.3.tgz, r-oldrel (x86_64): cpam_0.1.3.tgz |
Please use the canonical form https://CRAN.R-project.org/package=cpam to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.