The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Given count data from two conditions, it determines which transcripts are differentially expressed across the two conditions using Bayesian inference of the parameters of a bottom-up model for PCR amplification. This model is developed in Ndifon Wilfred, Hilah Gal, Eric Shifrut, Rina Aharoni, Nissan Yissachar, Nir Waysbort, Shlomit Reich Zeliger, Ruth Arnon, and Nir Friedman (2012), <http://www.pnas.org/content/109/39/15865.full>, and results in a distribution for the counts that is a superposition of the binomial and negative binomial distribution.
| Version: | 0.1.1 |
| Imports: | methods, stats, utils |
| Suggests: | knitr, rmarkdown |
| Published: | 2018-01-31 |
| DOI: | 10.32614/CRAN.package.denoiSeq |
| Author: | Gershom Buri [aut, cre], Wilfred Ndifon [aut] |
| Maintainer: | Gershom Buri <buri at aims.edu.gh> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | denoiSeq results |
| Reference manual: | denoiSeq.pdf |
| Vignettes: |
denoiSeq |
| Package source: | denoiSeq_0.1.1.tar.gz |
| Windows binaries: | r-devel: denoiSeq_0.1.1.zip, r-release: denoiSeq_0.1.1.zip, r-oldrel: denoiSeq_0.1.1.zip |
| macOS binaries: | r-release (arm64): denoiSeq_0.1.1.tgz, r-oldrel (arm64): denoiSeq_0.1.1.tgz, r-release (x86_64): denoiSeq_0.1.1.tgz, r-oldrel (x86_64): denoiSeq_0.1.1.tgz |
| Old sources: | denoiSeq archive |
Please use the canonical form https://CRAN.R-project.org/package=denoiSeq to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.