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Creates 'graphs' of species associations (interactions) and ordination biplots from co-occurrence data by fitting discrete gaussian copula graphical models. Methods described in Popovic, GC., Hui, FKC., Warton, DI., (2018) <doi:10.1016/j.jmva.2017.12.002>.
| Version: | 1.0.2 |
| Depends: | R (≥ 3.5.0), mvabund (≥ 4.2) |
| Imports: | glasso, plyr, sna, MASS, tweedie, igraph, betareg, doParallel, mgcv, glm2, ordinal, compiler, foreach, stats |
| Suggests: | knitr, rmarkdown, testthat, tidyr, ggplot2, RColorBrewer, ggraph, labdsv, tidygraph |
| Published: | 2022-03-02 |
| DOI: | 10.32614/CRAN.package.ecoCopula |
| Author: | Gordana Popovic [aut, cre], David Warton [ctb], Francis K.C. Hui [ctb], Michelle Lim [ctb] |
| Maintainer: | Gordana Popovic <g.popovic at unsw.edu.au> |
| License: | LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)] |
| NeedsCompilation: | no |
| Citation: | ecoCopula citation info |
| Materials: | README NEWS |
| In views: | Environmetrics |
| CRAN checks: | ecoCopula results |
| Reference manual: | ecoCopula.pdf |
| Vignettes: |
the_basics |
| Package source: | ecoCopula_1.0.2.tar.gz |
| Windows binaries: | r-devel: ecoCopula_1.0.2.zip, r-release: ecoCopula_1.0.2.zip, r-oldrel: ecoCopula_1.0.2.zip |
| macOS binaries: | r-release (arm64): ecoCopula_1.0.2.tgz, r-oldrel (arm64): ecoCopula_1.0.2.tgz, r-release (x86_64): ecoCopula_1.0.2.tgz, r-oldrel (x86_64): ecoCopula_1.0.2.tgz |
| Old sources: | ecoCopula archive |
| Reverse imports: | ecopower, ecostats |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.