enviPathR: Client for the 'enviPath' 'RESTful' API

The environmental pathway database ('enviPath') is a key resource for the functional annotation and pathway prediction of microbial communities, providing knowledge on biotransformation pathways along with the chemical reactions and produced compounds. This package enables the programmatic access to 'enviPath' by porting the database 'RESTful' API from R. This includes methods to both retrieve entries and predict pathways for custom compounds.

Version:	1.0.2
Depends:	R (≥ 4.1.0)
Imports:	BiocParallel, httr2, stats, stringr, tools
Suggests:	BiocStyle, ggraph, httptest2, igraph, knitr, rmarkdown, testthat (≥ 3.0.0)
Published:	2026-10-26
DOI:	10.32614/CRAN.package.enviPathR
Author:	Giulio Benedetti [aut, cre, cph]
Maintainer:	Giulio Benedetti <giulio.benedetti at utu.fi>
BugReports:	https://github.com/enviPath/enviPathR/issues
License:	Artistic-2.0
URL:	https://envipath.github.io/enviPathR/
NeedsCompilation:	no
Citation:	enviPathR citation info
Materials:	README, NEWS
CRAN checks:	enviPathR results

Documentation:

Reference manual:	enviPathR.html , enviPathR.pdf
Vignettes:	enviPathR: access enviPath and predict pathways from R (source, R code)

Downloads:

Package source:	enviPathR_1.0.2.tar.gz
Windows binaries:	r-devel: enviPathR_1.0.1.zip, r-release: enviPathR_1.0.1.zip, r-oldrel: enviPathR_1.0.1.zip
macOS binaries:	r-release (arm64): enviPathR_1.0.2.tgz, r-oldrel (arm64): enviPathR_1.0.2.tgz, r-release (x86_64): enviPathR_1.0.2.tgz, r-oldrel (x86_64): enviPathR_1.0.2.tgz
Old sources:	enviPathR archive

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