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Functions, data sets and shiny apps for "Epidemics: Models and Data in R (2nd edition)" by Ottar N. Bjornstad (2022, ISBN: 978-3-031-12055-8) <https://link.springer.com/book/10.1007/978-3-319-97487-3>. The package contains functions to study the Susceptible-Exposed-Infected-Removed SEIR model, spatial and age-structured Susceptible-Infected-Removed SIR models; time-series SIR and chain-binomial stochastic models; catalytic disease models; coupled map lattice models of spatial transmission and network models for social spread of infection. The package is also an advanced quantitative companion to the 'Coursera' Epidemics Massive Online Open Course <https://www.coursera.org/learn/epidemics>.
| Version: | 1.0-9 |
| Depends: | R (≥ 4.0.0), shiny, deSolve, plotly, polspline |
| Imports: | phaseR, ggplot2 |
| Suggests: | ade4, bbmle, fields, forecast, imputeTS, lme4, ncf, nleqslv, nlme, nlts, plotrix, pomp, rootSolve, Rwave, rworldmap, statnet, scatterplot3d |
| Published: | 2022-12-15 |
| DOI: | 10.32614/CRAN.package.epimdr2 |
| Author: | Ottar N. Bjornstad [aut, cre] |
| Maintainer: | Ottar N. Bjornstad <onb1 at psu.edu> |
| License: | GPL-3 |
| URL: | <https://github.com/objornstad/epimdr2>, <https://link.springer.com/book/10.1007/978-3-319-97487-3>, <https://ento.psu.edu/directory/onb1> |
| NeedsCompilation: | no |
| Materials: | README |
| In views: | Epidemiology |
| CRAN checks: | epimdr2 results |
| Reference manual: | epimdr2.pdf |
| Package source: | epimdr2_1.0-9.tar.gz |
| Windows binaries: | r-devel: epimdr2_1.0-9.zip, r-release: epimdr2_1.0-9.zip, r-oldrel: epimdr2_1.0-9.zip |
| macOS binaries: | r-release (arm64): epimdr2_1.0-9.tgz, r-oldrel (arm64): epimdr2_1.0-9.tgz, r-release (x86_64): epimdr2_1.0-9.tgz, r-oldrel (x86_64): epimdr2_1.0-9.tgz |
| Old sources: | epimdr2 archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.