facilityepimath: Analyze Mathematical Models of Healthcare Facility Transmission

Calculate useful quantities for a user-defined differential equation model of infectious disease transmission among individuals in a healthcare facility. Input rates of transition between states of individuals with and without the disease-causing organism, distributions of states at facility admission, relative infectivity of transmissible states, and the facility length of stay distribution. Calculate the model equilibrium and the basic facility reproduction number, as described in Toth et al. (2025) <doi:10.1101/2025.02.21.25322698>.

Version:	0.1.0
Imports:	MASS
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0)
Published:	2025-03-07
DOI:	10.32614/CRAN.package.facilityepimath
Author:	Damon Toth [aut, cre, cph], Centers for Disease Control and Prevention [fnd] (Modeling Infectious Diseases in Healthcare Network award number U01CK000585)
Maintainer:	Damon Toth <damon.toth at hsc.utah.edu>
BugReports:	https://github.com/EpiForeSITE/facilityepimath/issues
License:	MIT + file LICENSE
URL:	https://github.com/EpiForeSITE/facilityepimath
NeedsCompilation:	no
Materials:	README NEWS
CRAN checks:	facilityepimath results

Documentation:

Reference manual:	facilityepimath.pdf
Vignettes:	equilibrium-and-R0 (source, R code)

Downloads:

Package source:	facilityepimath_0.1.0.tar.gz
Windows binaries:	r-devel: not available, r-release: facilityepimath_0.1.0.zip, r-oldrel: not available
macOS binaries:	r-devel (arm64): facilityepimath_0.1.0.tgz, r-release (arm64): facilityepimath_0.1.0.tgz, r-oldrel (arm64): facilityepimath_0.1.0.tgz, r-devel (x86_64): facilityepimath_0.1.0.tgz, r-release (x86_64): facilityepimath_0.1.0.tgz, r-oldrel (x86_64): facilityepimath_0.1.0.tgz

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