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Provides tools to estimate the genome size of polyploid species using k-mer frequencies. This package includes functions to process k-mer frequency data and perform genome size estimation by fitting k-mer frequencies with a normal distribution model. It supports handling of complex polyploid genomes and offers various options for customizing the estimation process. The basic method 'findGSE' is detailed in Sun, Hequan, et al. (2018) <doi:10.1093/bioinformatics/btx637>.
| Version: | 1.2.0 |
| Depends: | R (≥ 4.2.0), RColorBrewer, ggplot2, grDevices |
| Imports: | pracma, scales, dplyr |
| Suggests: | knitr, rmarkdown |
| Published: | 2024-05-26 |
| DOI: | 10.32614/CRAN.package.findGSEP |
| Author: | Laiyi Fu [aut, cre], Hequan Sun [aut] |
| Maintainer: | Laiyi Fu <fulaiyi321 at 163.com> |
| BugReports: | https://github.com/sperfu/findGSEP/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/sperfu/findGSEP |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | findGSEP results |
| Reference manual: | findGSEP.pdf |
| Vignettes: |
vignette |
| Package source: | findGSEP_1.2.0.tar.gz |
| Windows binaries: | r-devel: findGSEP_1.2.0.zip, r-release: findGSEP_1.2.0.zip, r-oldrel: findGSEP_1.2.0.zip |
| macOS binaries: | r-release (arm64): findGSEP_1.2.0.tgz, r-oldrel (arm64): findGSEP_1.2.0.tgz, r-release (x86_64): findGSEP_1.2.0.tgz, r-oldrel (x86_64): findGSEP_1.2.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.