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fst4pg: Genetic Distance Segmentation for Population Genetics
Provides efficient methods to compute local and genome wide
genetic distances (corresponding to the so called Hudson Fst
parameters) through moment method, perform chromosome segmentation
into homogeneous Fst genomic regions, and selection sweep detection
for multi-population comparison. When multiple profile segmentation is
required, the procedure can be parallelized using the future package.
| Version: |
1.0.0 |
| Depends: |
R (≥ 2.10) |
| Imports: |
dplyr, fpopw, furrr, future, ggplot2, gplots, graphics, grDevices, purrr, rlang, scales, stats, stringr, tibble, tidyr, utils |
| Published: |
2022-07-03 |
| DOI: |
10.32614/CRAN.package.fst4pg |
| Author: |
Tristan Mary-Huard
 [aut, cre],
Guillem Rigaill
[aut] |
| Maintainer: |
Tristan Mary-Huard <tristan.mary-huard at agroparistech.fr> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: |
no |
| CRAN checks: |
fst4pg results |
Documentation:
Downloads:
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.