The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Quantitative trait loci mapping and genome wide association analysis are used to find candidate molecular marker or region associated with phenotype based on linkage analysis and linkage disequilibrium. Gene expression quantitative trait loci mapping is used to find candidate molecular marker or region associated with gene expression. In this package, we applied the method in Liu W. (2011) <doi:10.1007/s00122-011-1631-7> and Gusev A. (2016) <doi:10.1038/ng.3506> to genome and transcriptome wide association study, which is aimed at revealing the association relationship between phenotype and molecular markers, expression levels, molecular markers nested within different related expression effect and expression effect nested within different related molecular marker effect. F test based on full and reduced model are performed to obtain p value or likelihood ratio statistic. The best linear model can be obtained by stepwise regression analysis.
| Version: | 1.1.0 |
| Depends: | R (≥ 2.10) |
| Published: | 2019-06-01 |
| DOI: | 10.32614/CRAN.package.gtWAS |
| Author: | JunhuiLi WenxinLiu |
| Maintainer: | JunhuiLi <junhuili at cau.edu.cn> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | gtWAS results |
| Reference manual: | gtWAS.pdf |
| Package source: | gtWAS_1.1.0.tar.gz |
| Windows binaries: | r-devel: gtWAS_1.1.0.zip, r-release: gtWAS_1.1.0.zip, r-oldrel: gtWAS_1.1.0.zip |
| macOS binaries: | r-release (arm64): gtWAS_1.1.0.tgz, r-oldrel (arm64): gtWAS_1.1.0.tgz, r-release (x86_64): gtWAS_1.1.0.tgz, r-oldrel (x86_64): gtWAS_1.1.0.tgz |
| Old sources: | gtWAS archive |
Please use the canonical form https://CRAN.R-project.org/package=gtWAS to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.