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Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.
| Version: | 0.1 |
| Depends: | R (≥ 2.10) |
| Imports: | graphics, utils |
| Suggests: | knitr, rmarkdown, testthat |
| Published: | 2016-04-06 |
| DOI: | 10.32614/CRAN.package.haplotyper |
| Author: | Sebastian Simondi and Gaston Quero, with contributions from Victoria Bonnecarrere and Lucia Gutierrez |
| Maintainer: | Gaston Quero <gastonquero at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | haplotyper results |
| Reference manual: | haplotyper.pdf |
| Vignettes: |
Use haplotyper |
| Package source: | haplotyper_0.1.tar.gz |
| Windows binaries: | r-devel: haplotyper_0.1.zip, r-release: haplotyper_0.1.zip, r-oldrel: haplotyper_0.1.zip |
| macOS binaries: | r-release (arm64): haplotyper_0.1.tgz, r-oldrel (arm64): haplotyper_0.1.tgz, r-release (x86_64): haplotyper_0.1.tgz, r-oldrel (x86_64): haplotyper_0.1.tgz |
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These binaries (installable software) and packages are in development.
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