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Provides methods for closed testing using Simes local tests. In particular, calculates adjusted p-values for Hommel's multiple testing method, and provides lower confidence bounds for true discovery proportions. A robust but more conservative variant of the closed testing procedure that does not require the assumption of Simes inequality is also implemented. The methods have been described in detail in Goeman et al (2016) <doi:10.48550/arXiv.1611.06739>.
| Version: | 1.6 |
| Imports: | Rcpp, methods |
| LinkingTo: | Rcpp |
| Published: | 2021-12-17 |
| DOI: | 10.32614/CRAN.package.hommel |
| Author: | Jelle Goeman, Rosa Meijer, Thijmen Krebs |
| Maintainer: | Jelle Goeman <j.j.goeman at lumc.nl> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| Materials: | ChangeLog |
| In views: | Omics |
| CRAN checks: | hommel results |
| Reference manual: | hommel.pdf |
| Package source: | hommel_1.6.tar.gz |
| Windows binaries: | r-devel: hommel_1.6.zip, r-release: hommel_1.6.zip, r-oldrel: hommel_1.6.zip |
| macOS binaries: | r-release (arm64): hommel_1.6.tgz, r-oldrel (arm64): hommel_1.6.tgz, r-release (x86_64): hommel_1.6.tgz, r-oldrel (x86_64): hommel_1.6.tgz |
| Old sources: | hommel archive |
| Reverse depends: | rSEA |
| Reverse imports: | ARIbrain, cherry, HIMA, MultiGroupSequential |
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