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SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to play around with the pathways of interest.
Version: | 2.1.2 |
Depends: | R (≥ 2.10), hommel (≥ 1.4), ggplot2 |
Suggests: | knitr, rmarkdown |
Published: | 2024-06-11 |
DOI: | 10.32614/CRAN.package.rSEA |
Author: | Mitra Ebrahimpoor |
Maintainer: | Mitra Ebrahimpoor <mitra.ebrahimpoor at gmail.com> |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
NeedsCompilation: | no |
Materials: | README |
In views: | Omics |
CRAN checks: | rSEA results |
Reference manual: | rSEA.pdf |
Vignettes: |
rSEA R package |
Package source: | rSEA_2.1.2.tar.gz |
Windows binaries: | r-devel: rSEA_2.1.2.zip, r-release: rSEA_2.1.2.zip, r-oldrel: rSEA_2.1.2.zip |
macOS binaries: | r-release (arm64): rSEA_2.1.2.tgz, r-oldrel (arm64): rSEA_2.1.2.tgz, r-release (x86_64): rSEA_2.1.2.tgz, r-oldrel (x86_64): rSEA_2.1.2.tgz |
Old sources: | rSEA archive |
Reverse suggests: | ReporterScore |
Please use the canonical form https://CRAN.R-project.org/package=rSEA to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.