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rSEA: Simultaneous Enrichment Analysis

SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to play around with the pathways of interest.

Version: 2.1.2
Depends: R (≥ 2.10), hommel (≥ 1.4), ggplot2
Suggests: knitr, rmarkdown
Published: 2024-06-11
DOI: 10.32614/CRAN.package.rSEA
Author: Mitra Ebrahimpoor
Maintainer: Mitra Ebrahimpoor <mitra.ebrahimpoor at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: README
In views: Omics
CRAN checks: rSEA results

Documentation:

Reference manual: rSEA.pdf
Vignettes: rSEA R package

Downloads:

Package source: rSEA_2.1.2.tar.gz
Windows binaries: r-devel: rSEA_2.1.2.zip, r-release: rSEA_2.1.2.zip, r-oldrel: rSEA_2.1.2.zip
macOS binaries: r-release (arm64): rSEA_2.1.2.tgz, r-oldrel (arm64): rSEA_2.1.2.tgz, r-release (x86_64): rSEA_2.1.2.tgz, r-oldrel (x86_64): rSEA_2.1.2.tgz
Old sources: rSEA archive

Reverse dependencies:

Reverse suggests: ReporterScore

Linking:

Please use the canonical form https://CRAN.R-project.org/package=rSEA to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.