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Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with visible chromatids. Supports micrometers, cM and Mb or any unit. Three styles of centromeres are available: triangle, rounded and inProtein; and six styles of marks are available: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow (downArrow), exProtein (inProtein); its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).
| Version: | 2.0.13 |
| Depends: | R (≥ 3.5) |
| Imports: | rlang, crayon, plyr, dplyr, tidyr, scales |
| Suggests: | rentrez, ggplot2, ggpubr, ggtree, phytools, treeio, rmdformats, knitr, kableExtra, rvcheck, badger, rmarkdown, RCurl, shiny, shinydashboard, rhandsontable, gtools, rclipboard, clipr, shinyjs |
| Published: | 2023-08-22 |
| DOI: | 10.32614/CRAN.package.idiogramFISH |
| Author: | Fernando Roa [aut, cre], Mariana PC Telles [ctb] |
| Maintainer: | Fernando Roa <froao at unal.edu.co> |
| BugReports: | https://gitlab.com/ferroao/idiogramFISH/-/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://ferroao.gitlab.io/manualidiogramfish/, https://ferroao.gitlab.io/idiogramfishhelppages |
| NeedsCompilation: | no |
| SystemRequirements: | pandoc (>= 2.0) |
| Citation: | idiogramFISH citation info |
| Materials: | README NEWS |
| CRAN checks: | idiogramFISH results |
| Reference manual: | idiogramFISH.pdf |
| Vignettes: |
idiogramFISH idiogramFISH vignette |
| Package source: | idiogramFISH_2.0.13.tar.gz |
| Windows binaries: | r-devel: idiogramFISH_2.0.13.zip, r-release: idiogramFISH_2.0.13.zip, r-oldrel: idiogramFISH_2.0.13.zip |
| macOS binaries: | r-release (arm64): idiogramFISH_2.0.13.tgz, r-oldrel (arm64): idiogramFISH_2.0.13.tgz, r-release (x86_64): idiogramFISH_2.0.13.tgz, r-oldrel (x86_64): idiogramFISH_2.0.13.tgz |
| Old sources: | idiogramFISH archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.