imprinting: Calculate Birth Year-Specific Probabilities of Immune Imprinting to Influenza

Reconstruct birth-year specific probabilities of immune imprinting to influenza A, using the methods of Gostic et al. (2016) <doi:10.1126/science.aag1322>. Plot, save, or export the calculated probabilities for use in your own research. By default, the package calculates subtype-specific imprinting probabilities, but with user-provided frequency data, it is possible to calculate probabilities for arbitrary kinds of primary exposure to influenza A, including primary vaccination and exposure to specific clades, strains, etc.

Version:	0.1.1
Depends:	R (≥ 3.5.0)
Imports:	dplyr (≥ 1.0.9), tidyr (≥ 1.2.0), cowplot (≥ 1.0.0), ggplot2, tidyselect
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0), devtools
Published:	2022-12-16
DOI:	10.32614/CRAN.package.imprinting
Author:	Katelyn Gostic [aut], Alex Byrnes [ctb, cre]
Maintainer:	Alex Byrnes <abyrnes at uchicago.edu>
BugReports:	https://github.com/cobeylab/imprinting/issues
License:	MIT + file LICENSE
URL:	https://cobeylab.github.io/imprinting/
NeedsCompilation:	no
CRAN checks:	imprinting results

Documentation:

Reference manual:	imprinting.pdf
Vignettes:	custom-imprinting-types intro-to-imprinting

Downloads:

Package source:	imprinting_0.1.1.tar.gz
Windows binaries:	r-devel: imprinting_0.1.1.zip, r-release: imprinting_0.1.1.zip, r-oldrel: imprinting_0.1.1.zip
macOS binaries:	r-release (arm64): imprinting_0.1.1.tgz, r-oldrel (arm64): imprinting_0.1.1.tgz, r-release (x86_64): imprinting_0.1.1.tgz, r-oldrel (x86_64): imprinting_0.1.1.tgz
Old sources:	imprinting archive

Linking:

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