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Similarity Score Matrix and HeatMap for nucleic and amino acid k-mers. Similarity score is evaluated by Point Accepted Mutation (PAM) and BLOcks SUbstitution Matrix (BLOSUM). The 30, 40, 70, 120, 250 and 62, 45, 50, 62, 80, 100 matrix versions are available for PAM and BLOSUM, respectively. Alignment is evaluated by local and global alignment.
Version: | 2.1.0 |
Depends: | R (≥ 3.4.0) |
Imports: | utils, stats, Biostrings, BiocGenerics, pwalign |
Suggests: | RColorBrewer, knitr, rmarkdown, unittest, testthat (≥ 3.0.0) |
Published: | 2024-07-17 |
DOI: | 10.32614/CRAN.package.kmeRs |
Author: | Rafal Urniaz [aut, cre], Jason Lin [ctb] |
Maintainer: | Rafal Urniaz <rafal.urniaz at cantab.net> |
BugReports: | https://github.com/urniaz/kmeRs/issues |
License: | GPL-3 |
URL: | https://github.com/urniaz/kmeRs |
NeedsCompilation: | no |
Citation: | kmeRs citation info |
Materials: | NEWS |
CRAN checks: | kmeRs results |
Reference manual: | kmeRs.pdf |
Vignettes: |
Introduction to the kmeRs R package |
Package source: | kmeRs_2.1.0.tar.gz |
Windows binaries: | r-devel: kmeRs_2.1.0.zip, r-release: kmeRs_2.1.0.zip, r-oldrel: not available |
macOS binaries: | r-release (arm64): kmeRs_2.1.0.tgz, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
Old sources: | kmeRs archive |
Please use the canonical form https://CRAN.R-project.org/package=kmeRs to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.