linktree: Estimate Transmission Assortativity Coefficients

Estimates group transmission assortativity coefficients from transmission trees. Group transmission assortativity coefficients measure the tendency for individuals to transmit within their own group (e.g. age group, vaccination status, or location) compared to other groups. The package requires information on who infected whom, group membership for all individuals, and the relative sizes of each group in the population. For more details see Geismar et al. (2024) <doi:10.1371/journal.pone.0313037>.

Version:	0.1.0
Depends:	R (≥ 3.5)
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0), pak, epicontacts, visNetwork
Published:	2025-12-15
DOI:	10.32614/CRAN.package.linktree
Author:	Cyril Geismar [aut, cre, cph]
Maintainer:	Cyril Geismar <c.geismar21 at imperial.ac.uk>
BugReports:	https://github.com/CyGei/linktree/issues
License:	CC BY 4.0
URL:	https://github.com/CyGei/linktree, https://cygei.github.io/linktree/
NeedsCompilation:	no
Materials:	README
CRAN checks:	linktree results

Documentation:

Reference manual:	linktree.html , linktree.pdf
Vignettes:	linktree (source, R code)

Downloads:

Package source:	linktree_0.1.0.tar.gz
Windows binaries:	r-devel: linktree_0.1.0.zip, r-release: linktree_0.1.0.zip, r-oldrel: linktree_0.1.0.zip
macOS binaries:	r-release (arm64): linktree_0.1.0.tgz, r-oldrel (arm64): linktree_0.1.0.tgz, r-release (x86_64): linktree_0.1.0.tgz, r-oldrel (x86_64): linktree_0.1.0.tgz

Linking:

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