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localScore: Package for Sequence Analysis by Local Score

Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).

Version: 1.0.11
Depends: R (≥ 3.2.0)
Imports: Rcpp (≥ 0.12.16), utils
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat (≥ 2.1.0)
Published: 2023-11-02
DOI: 10.32614/CRAN.package.localScore
Author: Sebastian Simon [aut], David Robelin [aut, cre], Sabine Mercier [aut], Sebastien Dejean [aut], The authors of Eigen the library for the included version of Eigen [cph]
Maintainer: David Robelin <david.robelin at inrae.fr>
License: GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE]
Copyright: See the file COPYRIGHTS for various embedded Eigen library copyright details
NeedsCompilation: yes
CRAN checks: localScore results

Documentation:

Reference manual: localScore.pdf
Vignettes: Local Score Package

Downloads:

Package source: localScore_1.0.11.tar.gz
Windows binaries: r-devel: localScore_1.0.11.zip, r-release: localScore_1.0.11.zip, r-oldrel: localScore_1.0.11.zip
macOS binaries: r-release (arm64): localScore_1.0.11.tgz, r-oldrel (arm64): localScore_1.0.11.tgz, r-release (x86_64): localScore_1.0.11.tgz, r-oldrel (x86_64): localScore_1.0.11.tgz
Old sources: localScore archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=localScore to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.