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mbmixture: Microbiome Mixture Analysis

Evaluate whether a microbiome sample is a mixture of two samples, by fitting a model for the number of read counts as a function of single nucleotide polymorphism (SNP) allele and the genotypes of two potential source samples. Lobo et al. (2021) <doi:10.1093/g3journal/jkab308>.

Version:	0.4
Depends:	R (≥ 3.1.0)
Imports:	stats, parallel, numDeriv
Suggests:	knitr, rmarkdown, testthat, devtools, roxygen2
Published:	2023-04-27
DOI:	10.32614/CRAN.package.mbmixture
Author:	Karl W Broman [aut, cre]
Maintainer:	Karl W Broman <broman at wisc.edu>
BugReports:	https://github.com/kbroman/mbmixture/issues
License:	MIT + file LICENSE
URL:	https://github.com/kbroman/mbmixture
NeedsCompilation:	no
Citation:	mbmixture citation info
Materials:	README NEWS
CRAN checks:	mbmixture results

Documentation:

Reference manual:	mbmixture.pdf
Vignettes:	R/mbmixture User Guide

Downloads:

Package source:	mbmixture_0.4.tar.gz
Windows binaries:	r-devel: mbmixture_0.4.zip, r-release: mbmixture_0.4.zip, r-oldrel: mbmixture_0.4.zip
macOS binaries:	r-release (arm64): mbmixture_0.4.tgz, r-oldrel (arm64): mbmixture_0.4.tgz, r-release (x86_64): mbmixture_0.4.tgz, r-oldrel (x86_64): mbmixture_0.4.tgz
Old sources:	mbmixture archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.