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mclink: Metabolic Pathway Completeness and Abundance Calculation

Provides tools for analyzing metabolic pathway completeness, abundance, and transcripts using KEGG Orthology (KO) data from (meta)genomic and (meta)transcriptomic studies. Supports both completeness (presence/absence) and abundance-weighted analyses. Includes built-in KEGG reference datasets. For more details see Li et al. (2023) <doi:10.1038/s41467-023-42193-7>.

Version: 1.1
Depends: R (≥ 3.5)
Imports: data.table (≥ 1.17.0), dplyr (≥ 1.1.4), stringr (≥ 1.5.1), tibble (≥ 3.2.1), utils
Published: 2025-08-22
DOI: 10.32614/CRAN.package.mclink
Author: Liuyang Li ORCID iD [aut, cre]
Maintainer: Liuyang Li <cyanobacteria at yeah.net>
BugReports: https://github.com/LiuyangLee/mclink/issues
License: GPL-3
URL: https://github.com/LiuyangLee/mclink
NeedsCompilation: no
Materials: README
CRAN checks: mclink results

Documentation:

Reference manual: mclink.html , mclink.pdf

Downloads:

Package source: mclink_1.1.tar.gz
Windows binaries: r-devel: mclink_1.1.zip, r-release: mclink_1.1.zip, r-oldrel: mclink_1.1.zip
macOS binaries: r-release (arm64): mclink_1.1.tgz, r-oldrel (arm64): mclink_1.1.tgz, r-release (x86_64): mclink_1.1.tgz, r-oldrel (x86_64): mclink_1.1.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=mclink to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.