The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Wrapper for 'Minimap2'. 'Minimap2' is a very valuable long read aligner for the Pacbio and Oxford Nanopore Technologies sequencing platforms. 'minimapR' is an R wrapper for 'minimap2' which was developed by Heng Li <me@liheng.org>. *SPECIAL NOTES 1. Examples can only be run from 'GitHub' installation. 2. 'conda' or 'mamba' must be used to install 'minimapR' on your system. 3. For Windows users, 'minimap2' and 'samtools' can be installed via MSYS2, instructions are provided when 'minimap2_installation()' is run. Li, Heng (2018) <doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".
Version: | 0.0.1.3 |
Depends: | R (≥ 4.4.0), Rsamtools, pafr |
Suggests: | knitr, rmarkdown |
Published: | 2025-04-09 |
DOI: | 10.32614/CRAN.package.minimapR |
Author: | Jake Reed |
Maintainer: | Jake Reed <hreed.ga at gmail.com> |
License: | MIT + file LICENSE |
URL: | https://github.com/jake-bioinfo/minimapR |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | minimapR results |
Reference manual: | minimapR.pdf |
Vignettes: |
Using minimapR (source, R code) |
Package source: | minimapR_0.0.1.3.tar.gz |
Windows binaries: | r-devel: minimapR_0.0.1.3.zip, r-release: minimapR_0.0.1.3.zip, r-oldrel: minimapR_0.0.1.3.zip |
macOS binaries: | r-release (arm64): minimapR_0.0.1.3.tgz, r-oldrel (arm64): minimapR_0.0.1.3.tgz, r-release (x86_64): minimapR_0.0.1.3.tgz, r-oldrel (x86_64): minimapR_0.0.1.3.tgz |
Old sources: | minimapR archive |
Please use the canonical form https://CRAN.R-project.org/package=minimapR to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.