minimapR: Wrapper for 'minimap2'

Wrapper for 'Minimap2'. 'Minimap2' is a very valuable long read aligner for the Pacbio and Oxford Nanopore Technologies sequencing platforms. 'minimapR' is an R wrapper for 'minimap2' which was developed by Heng Li <me@liheng.org>. *SPECIAL NOTES 1. Examples can only be run from 'GitHub' installation. 2. If using a Windows operating system, installation of the 'MSYS2' Linux emulator is required. 3. If using a Mac operating system, installation of 'Homebrew' is required. Li, Heng (2018) <doi:10.1093/bioinformatics/bty191> "Minimap2: pairwise alignment for nucleotide sequences".

Version:	0.0.1.0
Depends:	R (≥ 4.0.0), Rsamtools, git2r, pafr
Suggests:	knitr, rmarkdown
Published:	2024-07-21
DOI:	10.32614/CRAN.package.minimapR
Author:	Jake Reed [aut, cre], Pradyun Pulipaka [ctb]
Maintainer:	Jake Reed <hreed.ga at gmail.com>
License:	MIT + file LICENSE
URL:	https://github.com/jake-bioinfo/minimapR
NeedsCompilation:	no
Materials:	README
CRAN checks:	minimapR results [issues need fixing before 2024-12-11]

Documentation:

Reference manual:	minimapR.pdf
Vignettes:	Using minimapR

Downloads:

Package source:	minimapR_0.0.1.0.tar.gz
Windows binaries:	r-devel: minimapR_0.0.1.0.zip, r-release: minimapR_0.0.1.0.zip, r-oldrel: minimapR_0.0.1.0.zip
macOS binaries:	r-release (arm64): minimapR_0.0.1.0.tgz, r-oldrel (arm64): minimapR_0.0.1.0.tgz, r-release (x86_64): minimapR_0.0.1.0.tgz, r-oldrel (x86_64): minimapR_0.0.1.0.tgz

Linking:

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