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nanostringr: Performs Quality Control, Data Normalization, and Batch Effect
Correction for 'NanoString nCounter' Data
Provides quality control (QC), normalization, and batch
effect correction operations for 'NanoString nCounter' data, Talhouk
et al. (2016) <doi:10.1371/journal.pone.0153844>. Various metrics are
used to determine which samples passed or failed QC. Gene expression
should first be normalized to housekeeping genes, before a
reference-based approach is used to adjust for batch effects. Raw
NanoString data can be imported in the form of Reporter Code Count
(RCC) files.
| Version: |
0.4.2 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
assertthat, ccaPP, dplyr, purrr, rlang, tidyr |
| Suggests: |
covr, knitr, magrittr, rmarkdown, testthat |
| Published: |
2024-06-11 |
| DOI: |
10.32614/CRAN.package.nanostringr |
| Author: |
Derek Chiu  [aut,
cre],
Aline Talhouk
[aut],
Samuel Leung
[aut] |
| Maintainer: |
Derek Chiu <dchiu at bccrc.ca> |
| BugReports: |
https://github.com/TalhoukLab/nanostringr/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/TalhoukLab/nanostringr/,
https://talhouklab.github.io/nanostringr/ |
| NeedsCompilation: |
no |
| Citation: |
nanostringr citation info |
| Materials: |
NEWS |
| In views: |
Omics |
| CRAN checks: |
nanostringr results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=nanostringr
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.