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Summarizes the taxonomic composition, diversity contribution of the rare and abundant community by using OTU (operational taxonomic unit) table which was generated by analyzing pipeline of 'QIIME' or 'mothur'. The rare biosphere in this package is subset by the relative abundance threshold (for details about rare biosphere please see Lynch and Neufeld (2015) <doi:10.1038/nrmicro3400>).
| Version: | 0.1.2 |
| Depends: | R (≥ 3.5.0) |
| Imports: | reshape2 (≥ 1.4) |
| Published: | 2023-09-05 |
| Author: | Sizhong Yang |
| Maintainer: | Sizhong Yang <yanglzu at 163.com> |
| License: | GPL (≥ 3) |
| URL: | https://github.com/cam315/otuSummary |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | otuSummary results |
| Reference manual: | otuSummary.pdf |
| Package source: | otuSummary_0.1.2.tar.gz |
| Windows binaries: | r-devel: otuSummary_0.1.2.zip, r-release: otuSummary_0.1.2.zip, r-oldrel: otuSummary_0.1.2.zip |
| macOS binaries: | r-release (arm64): otuSummary_0.1.2.tgz, r-oldrel (arm64): otuSummary_0.1.2.tgz, r-release (x86_64): otuSummary_0.1.2.tgz, r-oldrel (x86_64): otuSummary_0.1.2.tgz |
| Old sources: | otuSummary archive |
| Reverse imports: | stppSim |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.