phyloatlas: Access to the 'Phylo-Species Atlas' of Empirical Phylogenies

Provides convenience functions to fetch standardized phylogenetic trees and per-tree provenance metadata from the 'Phylo-Species Atlas' <https://github.com/franciscorichter/phylo-species-atlas> directly from R. The atlas is a curated collection of empirical species-level trees covering Bacteria, Archaea, and Eukaryota, organized into 62 partitions of life with tip labels normalized against a shared dictionary of standardized species identifiers. Functions load any of the standardized trees with species labels resolved from the dictionary, list available trees, and inspect per-tree provenance.

Version:	0.1.0
Depends:	R (≥ 4.0)
Imports:	ape, utils
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0), withr
Published:	2026-06-04
DOI:	10.32614/CRAN.package.phyloatlas (may not be active yet)
Author:	Francisco Richter [aut, cre]
Maintainer:	Francisco Richter <richtf at usi.ch>
BugReports:	https://github.com/franciscorichter/phylo-species-atlas/issues
License:	MIT + file LICENSE
URL:	https://github.com/franciscorichter/phylo-species-atlas, https://franciscorichter.github.io/phylo-species-atlas/
NeedsCompilation:	no
Materials:	README, NEWS
CRAN checks:	phyloatlas results

Documentation:

Reference manual:	phyloatlas.html , phyloatlas.pdf
Vignettes:	Getting started with phyloatlas (source, R code)

Downloads:

Package source:	phyloatlas_0.1.0.tar.gz
Windows binaries:	r-devel: phyloatlas_0.1.0.zip, r-release: not available, r-oldrel: phyloatlas_0.1.0.zip
macOS binaries:	r-release (arm64): phyloatlas_0.1.0.tgz, r-oldrel (arm64): phyloatlas_0.1.0.tgz, r-release (x86_64): phyloatlas_0.1.0.tgz, r-oldrel (x86_64): phyloatlas_0.1.0.tgz

Linking:

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