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phymapnet: Phylogeny-Guided Bayesian Microbial Network Inference

Implements a phylogeny-aware Bayesian graphical modeling framework for microbial network inference using a shrinkage precision estimator guided by a phylogenetic kernel, with optional hyperparameter-ensemble edge reliability analysis.

Version: 0.1.2
Imports: stats, ape, GUniFrac, compositions
Suggests: testthat (≥ 3.0.0), knitr, rmarkdown
Published: 2026-02-25
DOI: 10.32614/CRAN.package.phymapnet (may not be active yet)
Author: Rosa Aghdam [aut, cre]
Maintainer: Rosa Aghdam <rosaaghdam at gmail.com>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: phymapnet results

Documentation:

Reference manual: phymapnet.html , phymapnet.pdf

Downloads:

Package source: phymapnet_0.1.2.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): phymapnet_0.1.2.tgz, r-oldrel (arm64): phymapnet_0.1.2.tgz, r-release (x86_64): phymapnet_0.1.2.tgz, r-oldrel (x86_64): not available

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.