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prider: Multiplexed Primer Design by Linear Set Coverage Approximation

Implementation of an oligonucleotide primer and probe design algorithm using a linearly scaling approximation of set coverage. A detailed description available at Smolander and Tamminen, 2021; <doi:10.1101/2021.09.06.459073>.

Version: 1.0.6
Imports: Rcpp (≥ 1.0.5), dplyr, tidyr, purrr, stringr, magrittr, tibble, gplots
LinkingTo: Rcpp
Published: 2026-04-28
DOI: 10.32614/CRAN.package.prider
Author: Manu Tamminen ORCID iD [aut, cre], Niina Smolander ORCID iD [aut]
Maintainer: Manu Tamminen <mavatam at utu.fi>
License: BSD_3_clause + file LICENSE
URL: https://github.com/tamminenlab/prider
NeedsCompilation: yes
Materials: README
CRAN checks: prider results

Documentation:

Reference manual: prider.html , prider.pdf

Downloads:

Package source: prider_1.0.6.tar.gz
Windows binaries: r-devel: prider_1.0.6.zip, r-release: prider_1.0.6.zip, r-oldrel: prider_1.0.6.zip
macOS binaries: r-release (arm64): prider_1.0.6.tgz, r-oldrel (arm64): prider_1.0.6.tgz, r-release (x86_64): prider_1.0.6.tgz, r-oldrel (x86_64): prider_1.0.6.tgz
Old sources: prider archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.