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protein8k: Perform Analysis and Create Visualizations of Proteins

Read Protein Data Bank (PDB) files, performs its analysis, and presents the result using different visualization types including 3D. The package also has additional capability for handling Virus Report data from the National Center for Biotechnology Information (NCBI) database. Nature Structural Biology 10, 980 (2003) <doi:10.1038/nsb1203-980>. US National Library of Medicine (2021) <https://www.ncbi.nlm.nih.gov/datasets/docs/reference-docs/data-reports/virus/>.

Version: 0.0.1
Depends: R (≥ 3.1.2)
Imports: pryr, lattice, methods, magick, dplyr, grid, gridExtra, ggplot2, rjson, rlang, shiny
Suggests: knitr, rmarkdown
Published: 2021-08-16
DOI: 10.32614/CRAN.package.protein8k
Author: Simon Liles
Maintainer: Simon Liles <simon at quantknot.com>
License: CC0
NeedsCompilation: no
Materials: README
CRAN checks: protein8k results

Documentation:

Reference manual: protein8k.pdf
Vignettes: Introduction to protein8k
Using 'plot3D()'

Downloads:

Package source: protein8k_0.0.1.tar.gz
Windows binaries: r-devel: protein8k_0.0.1.zip, r-release: protein8k_0.0.1.zip, r-oldrel: protein8k_0.0.1.zip
macOS binaries: r-release (arm64): protein8k_0.0.1.tgz, r-oldrel (arm64): protein8k_0.0.1.tgz, r-release (x86_64): protein8k_0.0.1.tgz, r-oldrel (x86_64): protein8k_0.0.1.tgz

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.