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Routines in 'qtl2' to study allele patterns in quantitative trait loci (QTL) mapping over a chromosome. Useful in crosses with more than two alleles to identify how sets of alleles, genetically different strands at the same locus, have different response levels. Plots show profiles over a chromosome. Can handle multiple traits together. See <https://github.com/byandell/qtl2pattern>.
| Version: | 1.2.1 |
| Depends: | R (≥ 3.1.0) |
| Imports: | dplyr, tidyr, stringr, ggplot2, assertthat, qtl2, qtl2fst, fst, rlang, stats, graphics |
| Suggests: | knitr, rmarkdown, qtl2ggplot |
| Published: | 2023-03-11 |
| DOI: | 10.32614/CRAN.package.qtl2pattern |
| Author: | Brian S Yandell [aut, cre] |
| Maintainer: | Brian S Yandell <brian.yandell at wisc.edu> |
| License: | GPL-3 |
| URL: | https://github.com/byandell/qtl2pattern |
| NeedsCompilation: | no |
| CRAN checks: | qtl2pattern results |
| Reference manual: | qtl2pattern.pdf |
| Vignettes: |
demo qtl2pattern features |
| Package source: | qtl2pattern_1.2.1.tar.gz |
| Windows binaries: | r-devel: qtl2pattern_1.2.1.zip, r-release: qtl2pattern_1.2.1.zip, r-oldrel: qtl2pattern_1.2.1.zip |
| macOS binaries: | r-release (arm64): qtl2pattern_1.2.1.tgz, r-oldrel (arm64): qtl2pattern_1.2.1.tgz, r-release (x86_64): qtl2pattern_1.2.1.tgz, r-oldrel (x86_64): qtl2pattern_1.2.1.tgz |
| Old sources: | qtl2pattern archive |
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