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rarestR: Rarefaction-Based Species Richness Estimator

Calculate rarefaction-based alpha- and beta-diversity. Offer parametric extrapolation to estimate the total expected species in a single community and the total expected shared species between two communities. Visualize the curve-fitting for these estimators.

Version: 1.1.0
Depends: R (≥ 3.5.0)
Imports: Rdpack
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2024-09-26
DOI: 10.32614/CRAN.package.rarestR
Author: Peng Zhao ORCID iD [aut, cre], Yi Zou ORCID iD [aut]
Maintainer: Peng Zhao <pengzhao20 at outlook.com>
BugReports: https://github.com/pzhaonet/rarestR/issues
License: MIT + file LICENSE
URL: https://github.com/pzhaonet/rarestR, https://pzhaonet.github.io/rarestr/
NeedsCompilation: no
Citation: rarestR citation info
CRAN checks: rarestR results

Documentation:

Reference manual: rarestR.pdf
Vignettes: rarestR: An R package using rarefaction metrics to estimate α-diversity and β-diversity for incomplete samples (source, R code)

Downloads:

Package source: rarestR_1.1.0.tar.gz
Windows binaries: r-devel: rarestR_1.1.0.zip, r-release: rarestR_1.1.0.zip, r-oldrel: rarestR_1.1.0.zip
macOS binaries: r-release (arm64): rarestR_1.1.0.tgz, r-oldrel (arm64): rarestR_1.1.0.tgz, r-release (x86_64): rarestR_1.1.0.tgz, r-oldrel (x86_64): rarestR_1.1.0.tgz
Old sources: rarestR archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.