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Tools for qPCR data analysis using Delta Ct and Delta Delta Ct methods, including t-tests, ANOVA, ANCOVA, repeated-measures models, and publication-ready visualizations. The package supports multiple target, and multiple reference genes, and uses a calculation framework adopted from Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods.
| Version: | 2.1.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | multcomp, ggplot2, lmerTest, purrr, reshape2, tidyr, dplyr, grid, emmeans |
| Suggests: | knitr, rmarkdown, multcompView |
| Published: | 2026-01-08 |
| DOI: | 10.32614/CRAN.package.rtpcr |
| Author: | Ghader Mirzaghaderi [aut, cre, cph] |
| Maintainer: | Ghader Mirzaghaderi <gh.mirzaghaderi at uok.ac.ir> |
| License: | GPL-3 |
| URL: | https://mirzaghaderi.github.io/rtpcr/, https://github.com/mirzaghaderi/rtpcr |
| NeedsCompilation: | no |
| Citation: | rtpcr citation info |
| Materials: | NEWS |
| CRAN checks: | rtpcr results |
| Reference manual: | rtpcr.html , rtpcr.pdf |
| Vignettes: |
Manual (source, R code) Calculation method (source, R code) |
| Package source: | rtpcr_2.1.1.tar.gz |
| Windows binaries: | r-devel: rtpcr_2.1.1.zip, r-release: rtpcr_2.1.1.zip, r-oldrel: rtpcr_2.1.1.zip |
| macOS binaries: | r-release (arm64): rtpcr_2.1.1.tgz, r-oldrel (arm64): rtpcr_2.1.1.tgz, r-release (x86_64): rtpcr_2.1.1.tgz, r-oldrel (x86_64): rtpcr_2.1.1.tgz |
| Old sources: | rtpcr archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.