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Provides tools for clustering, validation, and ranking of single-cell RNA sequencing data. The package implements multiple clustering approaches, a collection of internal, external, and stability-based validation measures, and rank aggregation for comparing clustering solutions. User-defined clustering functions can also be incorporated into the validation framework. Methods are based in part on Visser and Datta (2025) <doi:10.1002/sim.70331>.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.5) |
| Imports: | cccd, cli, clue, igraph, mclust, mnormt, pcaMethods, RaceID, RankAggreg, Rcpp, Rtsne, S4Vectors, SingleCellExperiment, SummarizedExperiment |
| LinkingTo: | Rcpp, RcppArmadillo |
| Published: | 2026-09-12 |
| DOI: | 10.32614/CRAN.package.sclValid |
| Author: | Owen Visser [aut, cre], Justina Žurauskienė [ctb] (pcaReduce compatibility code adapted from the pcaReduce package), Christopher Yau [ctb] (pcaReduce compatibility code adapted from the pcaReduce package) |
| Maintainer: | Owen Visser <owviss at gmail.com> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | yes |
| Citation: | sclValid citation info |
| Materials: | README |
| CRAN checks: | sclValid results |
| Reference manual: | sclValid.html , sclValid.pdf |
| Package source: | sclValid_0.1.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): sclValid_0.1.0.tgz, r-release (x86_64): sclValid_0.1.0.tgz, r-oldrel (x86_64): sclValid_0.1.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.