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Rtsne: T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation

An R wrapper around the fast T-distributed Stochastic Neighbor Embedding implementation by Van der Maaten (see <https://github.com/lvdmaaten/bhtsne/> for more information on the original implementation).

Version: 0.17
Imports: Rcpp (≥ 0.11.0), stats
LinkingTo: Rcpp
Suggests: irlba, testthat
Published: 2023-12-07
DOI: 10.32614/CRAN.package.Rtsne
Author: Jesse Krijthe [aut, cre], Laurens van der Maaten [cph] (Author of original C++ code)
Maintainer: Jesse Krijthe <jkrijthe at gmail.com>
License: file LICENSE
URL: https://github.com/jkrijthe/Rtsne
NeedsCompilation: yes
Citation: Rtsne citation info
Materials: README NEWS
CRAN checks: Rtsne results

Documentation:

Reference manual: Rtsne.pdf

Downloads:

Package source: Rtsne_0.17.tar.gz
Windows binaries: r-devel: Rtsne_0.17.zip, r-release: Rtsne_0.17.zip, r-oldrel: Rtsne_0.17.zip
macOS binaries: r-release (arm64): Rtsne_0.17.tgz, r-oldrel (arm64): Rtsne_0.17.tgz, r-release (x86_64): Rtsne_0.17.tgz, r-oldrel (x86_64): Rtsne_0.17.tgz
Old sources: Rtsne archive

Reverse dependencies:

Reverse depends: BiRewire, KODAMA
Reverse imports: AutoPipe, bbknnR, CATALYST, ccfindR, celda, CelliD, CellTrails, ChromSCape, chromVAR, CINNA, CiteFuse, conos, densityClust, densvis, EmbedSOM, esetVis, EvoPhylo, fastTopics, FateID, FlowSOM, ggpca, HDclust, HIPPO, homosapienDEE2CellScore, HVT, iCellR, ILoReg, immunarch, immunaut, labdsv, Linnorm, M3C, maotai, MatrixQCvis, MBMethPred, Mercator, microbiome, MOFA2, monocle, PAC, pagoda2, pipeComp, PsychWordVec, RaceID, randomcoloR, RCSL, regioneReloaded, rliger, scater, scMultiSim, Sconify, scRNAtools, scTHI, scTreeViz, Seurat, sincell, SingleCellSignalR, singleCellTK, SNPfiltR, SubCellBarCode, SuperCell, swaRmverse, systemPipeTools, theftdlc, tomoda, visvow, WormTensor, ZetaSuite
Reverse suggests: ASURAT, AUCell, BloodCancerMultiOmics2017, CellMixS, clusterExperiment, cola, coRanking, COTAN, diceR, dimRed, dyndimred, Evacluster, fdm2id, HCAData, HDCytoData, iasva, inferCSN, iSEEu, liminal, MiscMetabar, mmb, netSmooth, NewWave, NGCHM, pctax, Platypus, proActiv, ProjectionBasedClustering, pRoloc, qmtools, rSWeeP, scBFA, scds, scGPS, seriation, SingleCellExperiment, spatialHeatmap, SPIAT, stm, structToolbox, systemPipeShiny, tidybulk, tidytof, tinyarray, UCSCXenaShiny, velociraptor, zinbwave

Linking:

Please use the canonical form https://CRAN.R-project.org/package=Rtsne to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.