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EmbedSOM: Fast Embedding Guided by Self-Organizing Map

Provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. Designed to work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019) <doi:10.12688/f1000research.21642.1>.

Version: 2.1.2
Depends: R (≥ 3.2)
Imports: FNN, ggplot2, igraph, Matrix, Rtsne, umap, uwot
Suggests: knitr, rmarkdown
Published: 2022-07-05
DOI: 10.32614/CRAN.package.EmbedSOM
Author: Mirek Kratochvil [aut, cre], Sofie Van Gassen [cph], Britt Callebaut [cph], Yvan Saeys [cph], Ron Wehrens [cph]
Maintainer: Mirek Kratochvil <exa.exa at gmail.com>
License: GPL (≥ 3)
URL: https://github.com/exaexa/EmbedSOM
NeedsCompilation: yes
Citation: EmbedSOM citation info
Materials: README
CRAN checks: EmbedSOM results

Documentation:

Reference manual: EmbedSOM.pdf
Vignettes: EmbedSOM basic embedding

Downloads:

Package source: EmbedSOM_2.1.2.tar.gz
Windows binaries: r-devel: EmbedSOM_2.1.2.zip, r-release: EmbedSOM_2.1.2.zip, r-oldrel: EmbedSOM_2.1.2.zip
macOS binaries: r-release (arm64): EmbedSOM_2.1.2.tgz, r-oldrel (arm64): EmbedSOM_2.1.2.tgz, r-release (x86_64): EmbedSOM_2.1.2.tgz, r-oldrel (x86_64): EmbedSOM_2.1.2.tgz
Old sources: EmbedSOM archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=EmbedSOM to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.