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Translates antibody levels measured in cross-sectional population samples into estimates of the frequency with which seroconversions (infections) occur in the sampled populations. Replaces the previous 'seroincidence' package. Methods originally published in Simonsen et al. (2009) <doi:10.1002/sim.3592> and Teunis et al. (2012) <doi:10.1002/sim.5322>, and further developed in subsequent publications by de Graaf et al. (2014) <doi:10.1016/j.epidem.2014.08.002>, Teunis et al. (2016) <doi:10.1016/j.epidem.2016.04.001>, and Teunis et al. (2020) <doi:10.1002/sim.8578>.
| Version: | 1.0.3 |
| Depends: | R (≥ 4.1.0) |
| Imports: | doParallel, dplyr (≥ 1.1.1), foreach, ggplot2, ggpubr, lifecycle, magrittr, mixtools, Rcpp, rlang, rngtools, scales, stats, tibble, tidyr, utils, cli |
| LinkingTo: | Rcpp |
| Suggests: | parallel, knitr, rmarkdown, tidyverse, fs, testthat (≥ 3.0.0), readr, bookdown, ggbeeswarm, DT |
| Published: | 2024-07-21 |
| DOI: | 10.32614/CRAN.package.serocalculator |
| Author: | Peter Teunis [aut, cph] (Author of the method and original code.), Kristina Lai [aut, cre], Chris Orwa [aut], Kristen Aiemjoy [aut], Douglas Ezra Morrison [aut] |
| Maintainer: | Kristina Lai <kwlai at ucdavis.edu> |
| License: | GPL-3 |
| URL: | https://github.com/UCD-SERG/serocalculator, https://ucd-serg.github.io/serocalculator/ |
| NeedsCompilation: | yes |
| Language: | en-US |
| Materials: | README NEWS |
| CRAN checks: | serocalculator results [issues need fixing before 2024-11-26] |
| Reference manual: | serocalculator.pdf |
| Package source: | serocalculator_1.0.3.tar.gz |
| Windows binaries: | r-devel: serocalculator_1.0.3.zip, r-release: serocalculator_1.0.3.zip, r-oldrel: serocalculator_1.0.3.zip |
| macOS binaries: | r-release (arm64): serocalculator_1.0.3.tgz, r-oldrel (arm64): serocalculator_1.0.3.tgz, r-release (x86_64): serocalculator_1.0.3.tgz, r-oldrel (x86_64): serocalculator_1.0.3.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.