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Discovery of spatial patterns with Hidden Markov Random Field. This package is designed for spatial transcriptomic data and single molecule fluorescent in situ hybridization (FISH) data such as sequential fluorescence in situ hybridization (seqFISH) and multiplexed error-robust fluorescence in situ hybridization (MERFISH). The methods implemented in this package are described in Zhu et al. (2018) <doi:10.1038/nbt.4260>.
| Version: | 0.1 |
| Depends: | R (≥ 3.5.0), pracma (≥ 1.9.0), fs (≥ 1.2) |
| Imports: | Rdpack |
| Published: | 2020-11-03 |
| DOI: | 10.32614/CRAN.package.smfishHmrf |
| Author: | Qian Zhu and Guo-Cheng Yuan |
| Maintainer: | Qian Zhu <zqian at jimmy.harvard.edu> |
| BugReports: | https://bitbucket.org/qzhudfci/smfishhmrf-r/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL] |
| URL: | https://bitbucket.org/qzhudfci/smfishhmrf-r/src/master/ |
| NeedsCompilation: | yes |
| Materials: | README ChangeLog |
| CRAN checks: | smfishHmrf results |
| Reference manual: | smfishHmrf.pdf |
| Package source: | smfishHmrf_0.1.tar.gz |
| Windows binaries: | r-devel: smfishHmrf_0.1.zip, r-release: smfishHmrf_0.1.zip, r-oldrel: smfishHmrf_0.1.zip |
| macOS binaries: | r-release (arm64): smfishHmrf_0.1.tgz, r-oldrel (arm64): smfishHmrf_0.1.tgz, r-release (x86_64): smfishHmrf_0.1.tgz, r-oldrel (x86_64): smfishHmrf_0.1.tgz |
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These binaries (installable software) and packages are in development.
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