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Implements the "shrinkage t" statistic introduced in Opgen-Rhein and Strimmer (2007) <doi:10.2202/1544-6115.1252> and a shrinkage estimate of the "correlation-adjusted t-score" (CAT score) described in Zuber and Strimmer (2009) <doi:10.1093/bioinformatics/btp460>. It also offers a convenient interface to a number of other regularized t-statistics commonly employed in high-dimensional case-control studies.
| Version: | 1.2.7 |
| Depends: | R (≥ 3.0.2), sda (≥ 1.3.8), fdrtool (≥ 1.2.17), corpcor (≥ 1.6.10) |
| Imports: | graphics, stats |
| Suggests: | limma, samr |
| Published: | 2021-11-27 |
| DOI: | 10.32614/CRAN.package.st |
| Author: | Rainer Opgen-Rhein, Verena Zuber, and Korbinian Strimmer. |
| Maintainer: | Korbinian Strimmer <strimmerlab at gmail.com> |
| License: | GPL (≥ 3) |
| URL: | https://strimmerlab.github.io/software/st/ |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | st results |
| Reference manual: | st.pdf |
| Package source: | st_1.2.7.tar.gz |
| Windows binaries: | r-devel: st_1.2.7.zip, r-release: st_1.2.7.zip, r-oldrel: st_1.2.7.zip |
| macOS binaries: | r-release (arm64): st_1.2.7.tgz, r-oldrel (arm64): st_1.2.7.tgz, r-release (x86_64): st_1.2.7.tgz, r-oldrel (x86_64): st_1.2.7.tgz |
| Old sources: | st archive |
| Reverse depends: | BioMark |
| Reverse suggests: | CMA, GiANT |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.