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Estimates both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non-parametric density estimation (Grenander estimator), for monotone regression (isotonic regression and antitonic regression with weights), for computing the greatest convex minorant (GCM) and the least concave majorant (LCM), for the half-normal and correlation distributions, and for computing empirical higher criticism (HC) scores and the corresponding decision threshold.
| Version: | 1.2.18 |
| Depends: | R (≥ 3.4.0) |
| Imports: | graphics, grDevices, stats |
| Published: | 2024-08-20 |
| DOI: | 10.32614/CRAN.package.fdrtool |
| Author: | Bernd Klaus [aut], Korbinian Strimmer [aut, cre] |
| Maintainer: | Korbinian Strimmer <strimmerlab at gmail.com> |
| License: | GPL (≥ 3) |
| URL: | https://strimmerlab.github.io/software/fdrtool/ |
| NeedsCompilation: | yes |
| Materials: | NEWS |
| CRAN checks: | fdrtool results |
| Reference manual: | fdrtool.pdf |
| Package source: | fdrtool_1.2.18.tar.gz |
| Windows binaries: | r-devel: fdrtool_1.2.18.zip, r-release: fdrtool_1.2.18.zip, r-oldrel: fdrtool_1.2.18.zip |
| macOS binaries: | r-release (arm64): fdrtool_1.2.18.tgz, r-oldrel (arm64): fdrtool_1.2.18.tgz, r-release (x86_64): fdrtool_1.2.18.tgz, r-oldrel (x86_64): fdrtool_1.2.18.tgz |
| Old sources: | fdrtool archive |
| Reverse depends: | DiffCorr, DMCHMM, GeneCycle, GeneNet, GSRI, HybridMTest, les, metapone, sda, st, TBEST |
| Reverse imports: | admix, asm, carSurv, DEP, DNLC, EGRNi, ERP, FitHiC, ggisotonic, HDMT, iclogcondist, idiolect, IHW, IHWpaper, InvStablePrior, LorMe, medScan, meshr, MixTwice, MonotoneHazardRatio, NetworkToolbox, nlnet, oposSOM, OVESEG, PolySTest, qgraph, rags2ridges, rnmamod, Rtpca, SimSeq, SOHPIE, survML, vaccine |
| Reverse suggests: | dsos, frontier, GiANT, mutoss, sand, wrMisc, wrProteo, wrTopDownFrag |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.