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stan4bart: Bayesian Additive Regression Trees with Stan-Sampled Parametric Extensions

Fits semiparametric linear and multilevel models with non-parametric additive Bayesian additive regression tree (BART; Chipman, George, and McCulloch (2010) <doi:10.1214/09-AOAS285>) components and Stan (Stan Development Team (2021) <https://mc-stan.org/>) sampled parametric ones. Multilevel models can be expressed using 'lme4' syntax (Bates, Maechler, Bolker, and Walker (2015) <doi:10.18637/jss.v067.i01>).

Version: 0.0-10
Depends: R (≥ 3.5-0), methods, dbarts (≥ 0.9-21)
Imports: stats, Matrix, parallel, RcppParallel (≥ 5.1.1)
LinkingTo: BH (≥ 1.72.0.3), Rcpp (≥ 1.0.5), RcppEigen (≥ 0.3.3.7.0), RcppParallel (≥ 5.1.1), dbarts (≥ 0.9-20)
Suggests: testthat (≥ 2.0-0), lme4
Published: 2024-09-04
DOI: 10.32614/CRAN.package.stan4bart
Author: Vincent Dorie ORCID iD [aut, cre], Ben Goodrich [ctb] (rstanarm_functions.R, StanHeaders), Jonah Gabry [ctb] (rstanarm_functions.R, StanHeaders), Imad Ali [ctb] (rstanarm_functions.R), Sam Brilleman [ctb] (rstanarm_functions.R), Paul-Christian Burkner ORCID iD [ctb] (rstanarm_functions.R), Joshua Pritikin ORCID iD [ctb] (StanHeaders), Andrew Gelman ORCID iD [ctb] (StanHeaders), Bob Carpenter [ctb] (StanHeaders), Matt Hoffman [ctb] (StanHeaders), Daniel Lee [ctb] (StanHeaders), Michael Betancourt ORCID iD [ctb] (StanHeaders), Marcus Brubaker ORCID iD [ctb] (StanHeaders), Jiqiang Guo [ctb] (StanHeaders), Peter Li [ctb] (StanHeaders), Allen Riddell [ctb] (StanHeaders), Marco Inacio ORCID iD [ctb] (StanHeaders), Mitzi Morris [ctb] (StanHeaders), Jeffrey Arnold ORCID iD [ctb] (StanHeaders), Rob Goedman [ctb] (StanHeaders), Brian Lau [ctb] (StanHeaders), Rob Trangucci [ctb] (StanHeaders), Alp Kucukelbir [ctb] (StanHeaders), Robert Grant [ctb] (StanHeaders), Dustin Tran [ctb] (StanHeaders), Michael Malecki [ctb] (StanHeaders), Yuanjun Gao [ctb] (StanHeaders), Trustees of Columbia University [cph] (rstanarm_functions.R, StanHeaders), Lawrence Livermore National Security [cph] (CVODES), The Regents of the University of California [cph] (CVODES), Southern Methodist University [cph] (CVODES), Douglas Bates ORCID iD [ctb] (lme4_functions.R), Martin Maechler ORCID iD [ctb] (lme4_functions.R), Ben Bolker ORCID iD [ctb] (lme4_functions.R), Steve Walker ORCID iD [ctb] (lme4_functions.R), Armon Dadgar [ctb] (adaptive radix tree), Bothner Per [ctb] (config.guess), Elliston Ben [ctb] (config.guess), Free Software Foundation [cph] (config.sub), Guido U Draheim [ctb] (ax_check_compile_flag.m4), Maarten Bosmans [ctb] (ax_check_compile_flag.m4), Christophe Tournayre [ctb] (ax_ext.m4), Michael Petch [ctb] (ax_ext.m4, ax_gcc_x86_avx_xgetbv.m4, ax_gcc_x86_cpuid.m4), Rafael de Lucena Valle [ctb] (ax_ext.m4), Steven G. Johnson ORCID iD [ctb] (ax_gcc_x86_cpuid.m4), Matteo Frigo [ctb] (ax_gcc_x86_cpuid.m4), Scott Pakin ORCID iD [ctb] (ax_func_posix_memalign.m4)
Maintainer: Vincent Dorie <vdorie at gmail.com>
BugReports: https://github.com/vdorie/stan4bart/issues
License: GPL (≥ 3)
URL: https://github.com/vdorie/stan4bart
NeedsCompilation: yes
Materials: NEWS
CRAN checks: stan4bart results

Documentation:

Reference manual: stan4bart.pdf

Downloads:

Package source: stan4bart_0.0-10.tar.gz
Windows binaries: r-devel: stan4bart_0.0-10.zip, r-release: stan4bart_0.0-10.zip, r-oldrel: stan4bart_0.0-10.zip
macOS binaries: r-release (arm64): stan4bart_0.0-10.tgz, r-oldrel (arm64): stan4bart_0.0-10.tgz, r-release (x86_64): stan4bart_0.0-10.tgz, r-oldrel (x86_64): stan4bart_0.0-10.tgz
Old sources: stan4bart archive

Reverse dependencies:

Reverse suggests: bartCause

Linking:

Please use the canonical form https://CRAN.R-project.org/package=stan4bart to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.