syntenyPlotteR: Genome Synteny Visualization

Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.

Version:	1.0.0
Imports:	ggplot2, stringr, utils
Suggests:	knitr, rmarkdown
Published:	2023-10-03
DOI:	10.32614/CRAN.package.syntenyPlotteR
Author:	Marta Farre [aut, cre, cph], Sarah Quigley [aut], Joana Damas [aut], Denis Larkin [aut]
Maintainer:	Marta Farre <m.farre-belmonte at kent.ac.uk>
BugReports:	https://github.com/Farre-lab/syntenyPlotteR/issues
License:	MIT + file LICENSE
NeedsCompilation:	no
Citation:	syntenyPlotteR citation info
Materials:	README NEWS
CRAN checks:	syntenyPlotteR results

Documentation:

Reference manual:	syntenyPlotteR.pdf
Vignettes:	SyntenyPlotteR - a tool for genome synteny visualisation

Downloads:

Package source:	syntenyPlotteR_1.0.0.tar.gz
Windows binaries:	r-devel: syntenyPlotteR_1.0.0.zip, r-release: syntenyPlotteR_1.0.0.zip, r-oldrel: syntenyPlotteR_1.0.0.zip
macOS binaries:	r-release (arm64): syntenyPlotteR_1.0.0.tgz, r-oldrel (arm64): syntenyPlotteR_1.0.0.tgz, r-release (x86_64): syntenyPlotteR_1.0.0.tgz, r-oldrel (x86_64): syntenyPlotteR_1.0.0.tgz

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