The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

syntenyPlotteR: Genome Synteny Visualization

Draw syntenic relationships between genome assemblies. There are 3 functions which take a tab delimited file containing alignment data for syntenic blocks between genomes to produce either a linear alignment plot, an evolution highway style plot, or a painted ideogram representing syntenic relationships. There is also a function to convert alignment data in the DESCHRAMBLER/inferCAR format to the required data structure.

Version: 1.0.0
Imports: ggplot2, stringr, utils
Suggests: knitr, rmarkdown
Published: 2023-10-03
DOI: 10.32614/CRAN.package.syntenyPlotteR
Author: Marta Farre [aut, cre, cph], Sarah Quigley [aut], Joana Damas [aut], Denis Larkin [aut]
Maintainer: Marta Farre <m.farre-belmonte at kent.ac.uk>
BugReports: https://github.com/Farre-lab/syntenyPlotteR/issues
License: MIT + file LICENSE
NeedsCompilation: no
Citation: syntenyPlotteR citation info
Materials: README NEWS
CRAN checks: syntenyPlotteR results

Documentation:

Reference manual: syntenyPlotteR.pdf
Vignettes: SyntenyPlotteR - a tool for genome synteny visualisation

Downloads:

Package source: syntenyPlotteR_1.0.0.tar.gz
Windows binaries: r-devel: syntenyPlotteR_1.0.0.zip, r-release: syntenyPlotteR_1.0.0.zip, r-oldrel: syntenyPlotteR_1.0.0.zip
macOS binaries: r-release (arm64): syntenyPlotteR_1.0.0.tgz, r-oldrel (arm64): syntenyPlotteR_1.0.0.tgz, r-release (x86_64): syntenyPlotteR_1.0.0.tgz, r-oldrel (x86_64): syntenyPlotteR_1.0.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=syntenyPlotteR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.