tidyestimate: A Tidy Implementation of 'ESTIMATE'

The 'ESTIMATE' package infers tumor purity from expression data as a function of immune and stromal infiltrate, but requires writing of intermediate files, is un-pipeable, and performs poorly when presented with modern datasets with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of 'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.

Version:	1.1.1
Depends:	R (≥ 4.1.0)
Imports:	glue, dplyr, stats, rlang, ggrepel, ggplot2
Suggests:	rmarkdown, knitr
Published:	2023-08-21
DOI:	10.32614/CRAN.package.tidyestimate
Author:	Kai Aragaki [aut, cre], Paul Roebuck [cph] (Copyright holder of ESTIMATE package), Kosuke Yoshihara [aut] (Author of original ESTIMATE algorithm), Rahulsimham Vegesna [aut] (Author of original ESTIMATE algorithm), Hoon Kim [aut] (Author of original ESTIMATE algorithm), Roel Verhaak [aut] (Author of original ESTIMATE algorithm)
Maintainer:	Kai Aragaki <aaragak1 at jhmi.edu>
BugReports:	https://github.com/KaiAragaki/tidyestimate/issues
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
Copyright:	see file COPYRIGHTS
URL:	https://github.com/KaiAragaki/tidyestimate
NeedsCompilation:	no
Materials:	README NEWS
In views:	Omics
CRAN checks:	tidyestimate results

Documentation:

Reference manual:	tidyestimate.pdf
Vignettes:	Using tidyestimate

Downloads:

Package source:	tidyestimate_1.1.1.tar.gz
Windows binaries:	r-devel: tidyestimate_1.1.1.zip, r-release: tidyestimate_1.1.1.zip, r-oldrel: tidyestimate_1.1.1.zip
macOS binaries:	r-release (arm64): tidyestimate_1.1.1.tgz, r-oldrel (arm64): tidyestimate_1.1.1.tgz, r-release (x86_64): tidyestimate_1.1.1.tgz, r-oldrel (x86_64): tidyestimate_1.1.1.tgz
Old sources:	tidyestimate archive

Linking:

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