The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

twosigma: DE Analysis for Single-Cell RNA-Sequencing Data

Implements the TWO-Component Single Cell Model-Based Association Method (TWO-SIGMA) for gene-level differential expression (DE) analysis and DE-based gene set testing of single-cell RNA-sequencing datasets. See Van Buren et al. (2020) <doi:10.1002/gepi.22361> and Van Buren et al. (2021) <doi:10.1101/2021.01.24.427979>.

Version: 1.0.2
Imports: multcomp (≥ 1.4-13), glmmTMB, methods, pscl (≥ 1.5.5), pbapply (≥ 1.4.0), parallel (≥ 3.6.3), doParallel (≥ 1.0.15)
Suggests: testthat
Published: 2021-12-13
DOI: 10.32614/CRAN.package.twosigma
Author: Eric Van Buren [aut, cre], Yun Li [aut], Di Wu [aut], Ming Hu [aut]
Maintainer: Eric Van Buren <edvanburen at gmail.com>
BugReports: https://github.com/edvanburen/twosigma/issues
License: AGPL-3
URL: https://github.com/edvanburen/twosigma
NeedsCompilation: no
Materials: README NEWS
CRAN checks: twosigma results

Documentation:

Reference manual: twosigma.pdf

Downloads:

Package source: twosigma_1.0.2.tar.gz
Windows binaries: r-devel: twosigma_1.0.2.zip, r-release: twosigma_1.0.2.zip, r-oldrel: twosigma_1.0.2.zip
macOS binaries: r-release (arm64): twosigma_1.0.2.tgz, r-oldrel (arm64): twosigma_1.0.2.tgz, r-release (x86_64): twosigma_1.0.2.tgz, r-oldrel (x86_64): twosigma_1.0.2.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=twosigma to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.