wikiprofiler: Data Integration and Visualization on 'WikiPathways' Graphics

Retrieves pathway graphics from 'WikiPathways' and maps user-supplied quantitative data, such as gene expression values, onto pathway nodes. Provides a pipe-friendly grammar for building pathway visualizations with layered fills, text highlighting, condition-wise comparisons, data preparation helpers, and batch rendering utilities.

Version:	0.1.7
Imports:	ggplot2, ggplotify, grDevices, grid, gson, methods, rsvg, yulab.utils (≥ 0.1.7)
Suggests:	clusterProfiler, DOSE, knitr, org.Hs.eg.db, quarto, rmarkdown
Published:	2026-08-25
DOI:	10.32614/CRAN.package.wikiprofiler
Author:	Guangchuang Yu [aut, cre, cph], Yihao Chen [aut]
Maintainer:	Guangchuang Yu <guangchuangyu at gmail.com>
BugReports:	https://github.com/YuLab-SMU/wikiprofiler/issues
License:	Artistic-2.0
URL:	https://yulab-smu.top/contribution-knowledge-mining/
NeedsCompilation:	no
Materials:	README, NEWS
CRAN checks:	wikiprofiler results

Documentation:

Reference manual:	wikiprofiler.html , wikiprofiler.pdf
Vignettes:	Visualizing pathway-level data with wikiprofiler (source, R code)

Downloads:

Package source:	wikiprofiler_0.1.7.tar.gz
Windows binaries:	r-devel: wikiprofiler_0.1.6.zip, r-release: wikiprofiler_0.1.6.zip, r-oldrel: wikiprofiler_0.1.7.zip
macOS binaries:	r-release (arm64): wikiprofiler_0.1.7.tgz, r-oldrel (arm64): wikiprofiler_0.1.7.tgz, r-release (x86_64): wikiprofiler_0.1.7.tgz, r-oldrel (x86_64): wikiprofiler_0.1.7.tgz
Old sources:	wikiprofiler archive

Linking:

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