CRAN Package Check Results for Maintainer ‘Edward Burn <edward.burn at ndorms.ox.ac.uk>’

Last updated on 2024-09-01 05:49:48 CEST.

Package	ERROR	OK
CodelistGenerator	2	11
CohortConstructor		13
CohortSurvival		13
IncidencePrevalence	2	11

Package CodelistGenerator

Current CRAN status: ERROR: 2, OK: 11

Version: 3.1.0
Check: package dependencies
Result: ERROR Package required and available but unsuitable version: ‘omopgenerics’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package CohortConstructor

Current CRAN status: OK: 13

Package CohortSurvival

Current CRAN status: OK: 13

Package IncidencePrevalence

Current CRAN status: ERROR: 2, OK: 11

Version: 0.7.4
Check: running R code from vignettes
Result: ERROR Errors in running code in vignettes: when running code in ‘a02_Creating_denominator_populations.Rmd’ ... > library(knitr) > library(here) here() starts at /private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpAym3Vw/file104db5459ea63/vignettes > knitr::include_graphics(here("vignettes/dpop1.png")) When sourcing ‘a02_Creating_denominator_populations.R’: Error: Cannot find the file(s): "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpAym3Vw/file104db5459ea63/vignettes/vignettes/dpop1.png" Execution halted when running code in ‘a04_Calculating_prevalence.Rmd’ ... + "macOS") > library(here) here() starts at /private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpJ7wnFZ/file1125813c03079/vignettes > knitr::include_graphics(here("vignettes/point_prev.png")) When sourcing ‘a04_Calculating_prevalence.R’: Error: Cannot find the file(s): "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpJ7wnFZ/file1125813c03079/vignettes/vignettes/point_prev.png" Execution halted when running code in ‘a05_Calculating_incidence.Rmd’ ... + "macOS") > library(here) here() starts at /private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/Rtmpjgej50/file112c776f0d7c7/vignettes > knitr::include_graphics(here("vignettes/inc_no_rep_no_washout.png")) When sourcing ‘a05_Calculating_incidence.R’: Error: Cannot find the file(s): "/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/Rtmpjgej50/file112c776f0d7c7/vignettes/vignettes/inc_no_rep_no_washout.png" Execution halted ‘a01_Introduction_to_IncidencePrevalence.Rmd’ using ‘UTF-8’... [24s/32s] OK ‘a02_Creating_denominator_populations.Rmd’ using ‘UTF-8’... failed ‘a03_Creating_target_denominator_populations.Rmd’ using ‘UTF-8’... [13s/22s] OK ‘a04_Calculating_prevalence.Rmd’ using ‘UTF-8’... failed ‘a05_Calculating_incidence.Rmd’ using ‘UTF-8’... failed ‘a06_Plotting_options.Rmd’ using ‘UTF-8’... [11s/16s] OK Flavor: r-oldrel-macos-arm64

Version: 0.7.4
Check: running R code from vignettes
Result: ERROR Errors in running code in vignettes: when running code in ‘a02_Creating_denominator_populations.Rmd’ ... > library(knitr) > library(here) here() starts at /private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpC4gveg/file7e1037480098/vignettes > knitr::include_graphics(here("vignettes/dpop1.png")) When sourcing ‘a02_Creating_denominator_populations.R’: Error: Cannot find the file(s): "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpC4gveg/file7e1037480098/vignettes/vignettes/dpop1.png" Execution halted when running code in ‘a04_Calculating_prevalence.Rmd’ ... + "macOS") > library(here) here() starts at /private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpUpFwlj/file7f4140909b62/vignettes > knitr::include_graphics(here("vignettes/point_prev.png")) When sourcing ‘a04_Calculating_prevalence.R’: Error: Cannot find the file(s): "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpUpFwlj/file7f4140909b62/vignettes/vignettes/point_prev.png" Execution halted when running code in ‘a05_Calculating_incidence.Rmd’ ... + "macOS") > library(here) here() starts at /private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpXbIkT8/file7f4d46c50d82/vignettes > knitr::include_graphics(here("vignettes/inc_no_rep_no_washout.png")) When sourcing ‘a05_Calculating_incidence.R’: Error: Cannot find the file(s): "/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpXbIkT8/file7f4d46c50d82/vignettes/vignettes/inc_no_rep_no_washout.png" Execution halted ‘a01_Introduction_to_IncidencePrevalence.Rmd’ using ‘UTF-8’... [36s/48s] OK ‘a02_Creating_denominator_populations.Rmd’ using ‘UTF-8’... failed ‘a03_Creating_target_denominator_populations.Rmd’ using ‘UTF-8’... [17s/16s] OK ‘a04_Calculating_prevalence.Rmd’ using ‘UTF-8’... failed ‘a05_Calculating_incidence.Rmd’ using ‘UTF-8’... failed ‘a06_Plotting_options.Rmd’ using ‘UTF-8’... [16s/18s] OK Flavor: r-oldrel-macos-x86_64