CRAN Package Check Results for Maintainer ‘Edward Burn <edward.burn at ndorms.ox.ac.uk>’

Last updated on 2025-01-30 16:48:48 CET.

Package	NOTE	OK
CodelistGenerator	2	11
CohortConstructor	6	7
CohortSurvival	5	8
IncidencePrevalence	5	8
PhenotypeR	5	8

Package CodelistGenerator

Current CRAN status: NOTE: 2, OK: 11

Version: 3.3.1
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘CodelistFromCodelistWithDetails.R’ ‘codesFromConceptSet.R’ ‘codesInUse.R’ ‘compareCodelists.R’ ‘drugCodes.R’ ‘getDoseUnit.R’ ‘getICD10StandardCodes.R’ ‘getMappings.R’ ‘getRoutes.R’ ‘helperFunctions.R’ ‘mockVocabRef.R’ ‘runSearch.R’ ‘stratifyByConcept.R’ ‘stratifyByDoseUnit.R’ ‘stratifyByRoute.R’ ‘subsetOnDomain.R’ ‘subsetOnDoseUnit.R’ ‘subsetOnRouteCategory.R’ ‘summariseAchillesCodeUse.R’ ‘summariseCodeUse.R’ ‘summariseOrphanCodes.R’ ‘summariseUnmappedCodes.R’ ‘tableAchillesCodeUse.R’ ‘tableCodeUse.R’ ‘tableUnmappedCodes.R’ ‘vocabUtilities.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-x86_64

Package CohortConstructor

Current CRAN status: NOTE: 6, OK: 7

Version: 0.3.4
Check: installed package size
Result: NOTE installed size is 10.1Mb sub-directories of 1Mb or more: doc 9.4Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 0.3.3
Check: installed package size
Result: NOTE installed size is 10.1Mb sub-directories of 1Mb or more: doc 9.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package CohortSurvival

Current CRAN status: NOTE: 5, OK: 8

Version: 0.6.2
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘inputValidation.R’ ‘plotSurvival.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Package IncidencePrevalence

Current CRAN status: NOTE: 5, OK: 8

Version: 1.0.0
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘estimateIncidence.R’ ‘estimatePrevalence.R’ ‘generateDenominatorCohortSet.R’ ‘plotting.R’ ‘tables.R’ ‘tidyResults.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Package PhenotypeR

Current CRAN status: NOTE: 5, OK: 8

Version: 0.1.1
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘addCodelistAttribute.R’ ‘codelistDiagnostics.R’ ‘cohortDiagnostics.R’ ‘databaseDiagnostics.R’ ‘matchedDiagnostics.R’ ‘mockPhenotypeR.R’ ‘phenotypeDiagnostics.R’ ‘populationDiagnostics.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64