CRAN Package Check Results for Maintainer ‘Etienne Bacher <etienne.bacher at protonmail.com>’

Last updated on 2026-05-05 11:51:59 CEST.

Package	ERROR	WARN	NOTE	OK
altdoc			1	12
astgrepr		2		11
circletyper				13
conductor				13
datawizard	2			11
flir	1			12
prompter				13
shinyfullscreen				13
spoiler				13

Package altdoc

Current CRAN status: NOTE: 1, OK: 12

Additional issues

donttest

Version: 0.7.2
Check: for non-standard things in the check directory
Result: NOTE Found the following files/directories: ‘testpkg402532a43aefd’ Flavor: r-devel-linux-x86_64-fedora-gcc

Package astgrepr

Current CRAN status: WARN: 2, OK: 11

Version: 0.1.1
Check: whether package can be installed
Result: WARN Found the following significant warnings: ld: warning: object file (/Volumes/Builds/packages/sonoma-arm64/results/4.6/astgrepr.Rcheck/00_pkg_src/astgrepr/src/rust/target/release/libastgrepr.a[2](astgrepr-5506178f025efd51.astgrepr.ee8f74833b720cd3-cgu.0.rcgu.o)) was built for newer 'macOS' version (15.0) than being linked (14.0) ld: warning: object file (/Volumes/Builds/packages/sonoma-arm64/results/4.6/astgrepr.Rcheck/00_pkg_src/astgrepr/src/rust/target/release/libastgrepr.a[3](ea708c7824d36062-parser.o)) was built for newer 'macOS' version (15.0) than being linked (14.0) ld: warning: object file (/Volumes/Builds/packages/sonoma-arm64/results/4.6/astgrepr.Rcheck/00_pkg_src/astgrepr/src/rust/target/release/libastgrepr.a[4](ea708c7824d36062-scanner.o)) was built for newer 'macOS' version (15.0) than being linked (14.0) ld: warning: object file (/Volumes/Builds/packages/sonoma-arm64/results/4.6/astgrepr.Rcheck/00_pkg_src/astgrepr/src/rust/target/release/libastgrepr.a[5](98490c8781b409d2-lib.o)) was built for newer 'macOS' version (15.0) than being linked (14.0) See ‘/Volumes/Builds/packages/sonoma-arm64/results/4.6/astgrepr.Rcheck/00install.out’ for details. * used C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’ * used SDK: ‘MacOSX14.5.sdk’ Flavor: r-release-macos-arm64

Version: 0.1.1
Check: whether package can be installed
Result: WARN Found the following significant warnings: ld: warning: object file (./rust/target/release/libastgrepr.a(astgrepr-684d2b16452580b8.astgrepr.662bec521bc058f3-cgu.0.rcgu.o)) was built for newer macOS version (15.0) than being linked (11.0) ld: warning: object file (./rust/target/release/libastgrepr.a(ea708c7824d36062-parser.o)) was built for newer macOS version (15.0) than being linked (11.0) ld: warning: object file (./rust/target/release/libastgrepr.a(ea708c7824d36062-scanner.o)) was built for newer macOS version (15.0) than being linked (11.0) ld: warning: object file (./rust/target/release/libastgrepr.a(98490c8781b409d2-lib.o)) was built for newer macOS version (15.0) than being linked (11.0) See ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.6/astgrepr.Rcheck/00install.out’ for details. * used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ * used SDK: ‘MacOSX11.3.1.sdk’ Flavor: r-release-macos-x86_64

Package circletyper

Current CRAN status: OK: 13

Package conductor

Current CRAN status: OK: 13

Package datawizard

Current CRAN status: ERROR: 2, OK: 11

Version: 1.3.1
Check: examples
Result: ERROR Running examples in ‘datawizard-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: as.prop.table > ### Title: Convert a crosstable to a frequency or a propensity table > ### Aliases: as.prop.table as.prop.table.datawizard_crosstab > ### as.data.frame.datawizard_tables as.table.datawizard_table > > ### ** Examples > > data(efc) > > # Some cross tabulation > cross <- data_tabulate(efc, select = "e42dep", by = "c172code", proportions = "row") > cross e42dep | low level of education | intermediate level of education -------+------------------------+-------------------------------- 1 | 0 (0.0%) | 2 (100.0%) 2 | 0 (0.0%) | 4 (100.0%) 3 | 4 (14.3%) | 16 (57.1%) 4 | 4 (6.3%) | 42 (66.7%) <NA> | 0 (0.0%) | 2 (66.7%) -------+------------------------+-------------------------------- Total | 8 | 66 e42dep | high level of education | <NA> | Total -------+-------------------------+-----------+------ 1 | 0 (0.0%) | 0 (0.0%) | 2 2 | 0 (0.0%) | 0 (0.0%) | 4 3 | 6 (21.4%) | 2 (7.1%) | 28 4 | 10 (15.9%) | 7 (11.1%) | 63 <NA> | 0 (0.0%) | 1 (33.3%) | 3 -------+-------------------------+-----------+------ Total | 16 | 10 | 100 > > # Convert to a propensity table > as.prop.table(cross) Removing NA values from frequency table. [[1]] low level of education intermediate level of education 1 0.00000000 1.00000000 2 0.00000000 1.00000000 3 0.14285714 0.57142857 4 0.06349206 0.66666667 high level of education 1 0.00000000 2 0.00000000 3 0.21428571 4 0.15873016 > > # Convert to data.frame > result <- data_tabulate(efc, "c172code", by = "e16sex") > as.data.frame(result) var table 1 c172code c(1, 2, .... > as.data.frame(result)$table [[1]] c172code male female NA 1 1 5 3 0 2 2 32 34 0 3 3 4 12 0 4 <NA> 5 5 0 > as.data.frame(result, add_total = TRUE)$table [[1]] c172code male female <NA> Total 1 1 5 3 0 8 2 2 32 34 0 66 3 3 4 12 0 16 4 <NA> 5 5 0 10 5 Total 46 54 0 100 > > # Convert to a table that can be passed to chisq.test() > > out <- data_tabulate(efc, "c172code", by = "e16sex") > # we need to simplify the output, else we get a list of tables > tbl <- as.table(out, simplify = TRUE) Removing NA values from frequency table. > tbl male female 1 5 3 2 32 34 3 4 12 > suppressWarnings(chisq.test(tbl)) Pearson's Chi-squared test data: tbl X-squared = 3.8802, df = 2, p-value = 0.1437 > > # apply chisq.test to each table > out <- data_tabulate(efc, c("c172code", "e16sex")) Error in as.data.frame.integer(x[[i]], optional = TRUE) : row names contain missing values Calls: data_tabulate ... data.frame -> as.data.frame -> as.data.frame.integer Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed adjust 5.505 0.331 6.007 Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.3.1
Check: tests
Result: ERROR Running ‘testthat.R’ [371s/191s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(datawizard) > > test_check("datawizard") Starting 2 test processes. Saving _problems/test-data_tabulate-3.R Saving _problems/test-data_tabulate-25.R Saving _problems/test-data_tabulate-48.R Saving _problems/test-data_tabulate-60.R Saving _problems/test-data_tabulate-71.R Saving _problems/test-data_tabulate-115.R Saving _problems/test-data_tabulate-197.R Saving _problems/test-data_tabulate-217.R Saving _problems/test-data_tabulate-223.R Saving _problems/test-data_tabulate-230.R Saving _problems/test-data_tabulate-238.R Saving _problems/test-data_tabulate-245.R Saving _problems/test-data_tabulate-308.R Saving _problems/test-data_tabulate-316.R Saving _problems/test-data_tabulate-329.R Saving _problems/test-data_tabulate-334.R Saving _problems/test-data_tabulate-350.R Saving _problems/test-data_tabulate-361.R Saving _problems/test-data_tabulate-704.R Saving _problems/test-data_tabulate-832.R Saving _problems/test-data_tabulate-931.R Saving _problems/test-data_tabulate-1005.R > test-describe_distribution.R: Bootstrapping confidence intervals using 100 iterations, please be > test-describe_distribution.R: patient... > test-describe_distribution.R: For more stable intervals, increase the number > test-describe_distribution.R: of `iterations`, but note > test-describe_distribution.R: that this can also increase the computation time significantly. > test-describe_distribution.R: Bootstrapping confidence intervals using 100 iterations, please be > test-describe_distribution.R: patient... > test-describe_distribution.R: For more stable intervals, increase the number of `iterations`, but note > test-describe_distribution.R: that this can also increase the computation time significantly. > test-describe_distribution.R: Bootstrapping confidence intervals using 100 iterations, please be > test-describe_distribution.R: patient... > test-describe_distribution.R: For more stable intervals, increase the number of `iterations`, but note > test-describe_distribution.R: that this can also increase the computation time significantly. [ FAIL 22 | WARN 0 | SKIP 82 | PASS 1984 ] ══ Skipped tests (82) ══════════════════════════════════════════════════════════ • On CRAN (82): 'test-categorize.R:664:1', 'test-categorize.R:681:1', 'test-contr.deviation.R:10:1', 'test-data_codebook.R:4:1', 'test-data_codebook.R:9:1', 'test-data_codebook.R:14:1', 'test-data_codebook.R:30:1', 'test-data_codebook.R:53:1', 'test-data_codebook.R:58:1', 'test-data_codebook.R:63:1', 'test-data_codebook.R:78:1', 'test-data_codebook.R:86:1', 'test-data_codebook.R:94:1', 'test-data_codebook.R:105:1', 'test-data_codebook.R:115:1', 'test-data_codebook.R:126:1', 'test-data_codebook.R:138:1', 'test-data_codebook.R:156:1', 'test-data_codebook.R:173:1', 'test-data_codebook.R:182:1', 'test-data_codebook.R:191:1', 'test-data_codebook.R:237:1', 'test-data_partition.R:1:1', 'test-data_modify.R:488:1', 'test-data_modify.R:497:1', 'test-data_modify.R:717:1', 'test-data_read.R:8:1', 'test-data_peek.R:31:1', 'test-data_rescale.R:1:1', 'test-data_seek.R:85:1', 'test-data_separate.R:190:1', 'test-data_separate.R:285:1', 'test-data_separate.R:381:1', 'test-data_separate.R:402:1', 'test-data_summary.R:196:1', 'test-data_summary.R:208:1', 'test-data_summary.R:284:1', 'test-data_to_factor.R:124:1', 'test-data_to_long.R:61:1', 'test-data_to_long.R:498:1', 'test-data_to_numeric.R:1:1', 'test-data_to_numeric.R:51:1', 'test-data_to_numeric.R:215:3', 'test-data_tabulate.R:374:1', 'test-data_tabulate.R:547:1', 'test-data_tabulate.R:603:1', 'test-data_tabulate.R:636:1', 'test-data_tabulate.R:722:1', 'test-data_tabulate.R:816:1', 'test-data_write.R:5:1', 'test-demean.R:1:1', 'test-demean.R:85:1', 'test-empty-dataframe.R:1:1', 'test-describe_distribution.R:76:1', 'test-describe_distribution.R:87:1', 'test-describe_distribution.R:195:1', 'test-describe_distribution.R:209:1', 'test-describe_distribution.R:282:1', 'test-describe_distribution.R:412:1', 'test-describe_distribution.R:519:1', 'test-describe_distribution.R:528:1', 'test-means_by_group.R:1:1', 'test-means_by_group.R:24:1', 'test-print.dw_transformer.R:1:1', 'test-normalize.R:1:1', 'test-ranktransform.R:65:1', 'test-rescale_weights.R:1:1', 'test-rescale_weights.R:35:1', 'test-rescale_weights.R:49:1', 'test-reshape_ci.R:1:1', 'test-reshape_ci.R:16:1', 'test-smoothness.R:33:1', 'test-skewness-kurtosis.R:47:1', 'test-skewness-kurtosis.R:57:1', 'test-skewness-kurtosis.R:68:1', 'test-skewness-kurtosis.R:78:1', 'test-text_format.R:1:1', 'test-text_format.R:77:1', 'test-standardize_models.R:244:3', 'test-standardize_models.R:291:3', 'test-standardize_models.R:381:3', 'test-winsorization.R:5:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-data_tabulate.R:3:3'): data_tabulate factor ──────────────────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(efc$e42dep) at test-data_tabulate.R:3:3 2. └─datawizard:::data_tabulate.default(efc$e42dep) 3. ├─datawizard::data_rename(...) 4. │ └─base::is.data.frame(data) 5. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 6. ├─base::as.data.frame(x[[i]], optional = TRUE) 7. └─base::as.data.frame.table(x[[i]], optional = TRUE) 8. ├─base::eval(ex) 9. │ └─base::eval(ex) 10. └─base::data.frame(...) 11. ├─base::as.data.frame(x[[i]], optional = TRUE) 12. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:25:3'): data_tabulate numeric ────────────────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(efc$neg_c_7) at test-data_tabulate.R:25:3 2. └─datawizard:::data_tabulate.default(efc$neg_c_7) 3. ├─datawizard::data_rename(...) 4. │ └─base::is.data.frame(data) 5. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 6. ├─base::as.data.frame(x[[i]], optional = TRUE) 7. └─base::as.data.frame.table(x[[i]], optional = TRUE) 8. ├─base::eval(ex) 9. │ └─base::eval(ex) 10. └─base::data.frame(...) 11. ├─base::as.data.frame(x[[i]], optional = TRUE) 12. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:48:3'): data_tabulate, HTML ──────────────────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_s3_class(...) at test-data_tabulate.R:48:3 2. │ └─testthat::quasi_label(enquo(object)) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─insight::print_html(data_tabulate(efc$c172code)) 5. ├─datawizard::data_tabulate(efc$c172code) 6. └─datawizard:::data_tabulate.default(efc$c172code) 7. ├─datawizard::data_rename(...) 8. │ └─base::is.data.frame(data) 9. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 10. ├─base::as.data.frame(x[[i]], optional = TRUE) 11. └─base::as.data.frame.table(x[[i]], optional = TRUE) 12. ├─base::eval(ex) 13. │ └─base::eval(ex) 14. └─base::data.frame(...) 15. ├─base::as.data.frame(x[[i]], optional = TRUE) 16. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:60:3'): data_tabulate, tinytable ─────────────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─insight::display(data_tabulate(efc$c172code), format = "tt") 2. ├─datawizard::data_tabulate(efc$c172code) 3. └─datawizard:::data_tabulate.default(efc$c172code) 4. ├─datawizard::data_rename(...) 5. │ └─base::is.data.frame(data) 6. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 7. ├─base::as.data.frame(x[[i]], optional = TRUE) 8. └─base::as.data.frame.table(x[[i]], optional = TRUE) 9. ├─base::eval(ex) 10. │ └─base::eval(ex) 11. └─base::data.frame(...) 12. ├─base::as.data.frame(x[[i]], optional = TRUE) 13. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:71:3'): data_tabulate, weights ───────────────── Error in `as.data.frame.numeric(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(efc$e42dep, weights = efc$weights) at test-data_tabulate.R:71:3 2. └─datawizard:::data_tabulate.default(efc$e42dep, weights = efc$weights) 3. ├─datawizard::data_rename(...) 4. │ └─base::is.data.frame(data) 5. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 6. ├─base::as.data.frame(x[[i]], optional = TRUE) 7. └─base::as.data.frame.table(x[[i]], optional = TRUE) 8. ├─base::eval(ex) 9. │ └─base::eval(ex) 10. └─base::data.frame(...) 11. ├─base::as.data.frame(x[[i]], optional = TRUE) 12. └─base::as.data.frame.numeric(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:115:3'): data_tabulate data.frame ────────────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(efc, c("e16sex", "c172code")) at test-data_tabulate.R:115:3 2. └─datawizard:::data_tabulate.data.frame(efc, c("e16sex", "c172code")) 3. └─base::lapply(...) 4. └─datawizard (local) FUN(X[[i]], ...) 5. ├─datawizard::data_tabulate(...) 6. └─datawizard:::data_tabulate.default(...) 7. ├─datawizard::data_rename(...) 8. │ └─base::is.data.frame(data) 9. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 10. ├─base::as.data.frame(x[[i]], optional = TRUE) 11. └─base::as.data.frame.table(x[[i]], optional = TRUE) 12. ├─base::eval(ex) 13. │ └─base::eval(ex) 14. └─base::data.frame(...) 15. ├─base::as.data.frame(x[[i]], optional = TRUE) 16. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:197:3'): data_tabulate print ─────────────────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(x, name = "Large Number") at test-data_tabulate.R:197:3 2. └─datawizard:::data_tabulate.default(x, name = "Large Number") 3. ├─datawizard::data_rename(...) 4. │ └─base::is.data.frame(data) 5. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 6. ├─base::as.data.frame(x[[i]], optional = TRUE) 7. └─base::as.data.frame.table(x[[i]], optional = TRUE) 8. ├─base::eval(ex) 9. │ └─base::eval(ex) 10. └─base::data.frame(...) 11. ├─base::as.data.frame(x[[i]], optional = TRUE) 12. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:217:3'): data_tabulate print ─────────────────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(efc$e42dep) 2. └─datawizard:::data_tabulate.default(efc$e42dep) 3. ├─datawizard::data_rename(...) 4. │ └─base::is.data.frame(data) 5. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 6. ├─base::as.data.frame(x[[i]], optional = TRUE) 7. └─base::as.data.frame.table(x[[i]], optional = TRUE) 8. ├─base::eval(ex) 9. │ └─base::eval(ex) 10. └─base::data.frame(...) 11. ├─base::as.data.frame(x[[i]], optional = TRUE) 12. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:223:3'): data_tabulate print multiple ────────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(efc, c("c172code", "e16sex")) 2. └─datawizard:::data_tabulate.data.frame(efc, c("c172code", "e16sex")) 3. └─base::lapply(...) 4. └─datawizard (local) FUN(X[[i]], ...) 5. ├─datawizard::data_tabulate(...) 6. └─datawizard:::data_tabulate.default(...) 7. ├─datawizard::data_rename(...) 8. │ └─base::is.data.frame(data) 9. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 10. ├─base::as.data.frame(x[[i]], optional = TRUE) 11. └─base::as.data.frame.table(x[[i]], optional = TRUE) 12. ├─base::eval(ex) 13. │ └─base::eval(ex) 14. └─base::data.frame(...) 15. ├─base::as.data.frame(x[[i]], optional = TRUE) 16. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:230:3'): data_tabulate big numbers ───────────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(x) 2. └─datawizard:::data_tabulate.default(x) 3. ├─datawizard::data_rename(...) 4. │ └─base::is.data.frame(data) 5. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 6. ├─base::as.data.frame(x[[i]], optional = TRUE) 7. └─base::as.data.frame.table(x[[i]], optional = TRUE) 8. ├─base::eval(ex) 9. │ └─base::eval(ex) 10. └─base::data.frame(...) 11. ├─base::as.data.frame(x[[i]], optional = TRUE) 12. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:238:3'): data_tabulate print multiple, collapse ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(efc, c("c172code", "e16sex"), collapse = TRUE) 2. └─datawizard:::data_tabulate.data.frame(...) 3. └─base::lapply(...) 4. └─datawizard (local) FUN(X[[i]], ...) 5. ├─datawizard::data_tabulate(...) 6. └─datawizard:::data_tabulate.default(...) 7. ├─datawizard::data_rename(...) 8. │ └─base::is.data.frame(data) 9. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 10. ├─base::as.data.frame(x[[i]], optional = TRUE) 11. └─base::as.data.frame.table(x[[i]], optional = TRUE) 12. ├─base::eval(ex) 13. │ └─base::eval(ex) 14. └─base::data.frame(...) 15. ├─base::as.data.frame(x[[i]], optional = TRUE) 16. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:245:3'): data_tabulate grouped data.frame ────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(poorman::group_by(efc, e16sex), "c172code") at test-data_tabulate.R:245:3 2. └─datawizard:::data_tabulate.grouped_df(...) 3. ├─datawizard::data_tabulate(...) 4. └─datawizard:::data_tabulate.data.frame(...) 5. └─base::lapply(...) 6. └─datawizard (local) FUN(X[[i]], ...) 7. ├─datawizard::data_tabulate(...) 8. └─datawizard:::data_tabulate.default(...) 9. ├─datawizard::data_rename(...) 10. │ └─base::is.data.frame(data) 11. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 12. ├─base::as.data.frame(x[[i]], optional = TRUE) 13. └─base::as.data.frame.table(x[[i]], optional = TRUE) 14. ├─base::eval(ex) 15. │ └─base::eval(ex) 16. └─base::data.frame(...) 17. ├─base::as.data.frame(x[[i]], optional = TRUE) 18. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:308:3'): data_tabulate print grouped data ────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(poorman::group_by(efc, e16sex), "c172code") 2. └─datawizard:::data_tabulate.grouped_df(...) 3. ├─datawizard::data_tabulate(...) 4. └─datawizard:::data_tabulate.data.frame(...) 5. └─base::lapply(...) 6. └─datawizard (local) FUN(X[[i]], ...) 7. ├─datawizard::data_tabulate(...) 8. └─datawizard:::data_tabulate.default(...) 9. ├─datawizard::data_rename(...) 10. │ └─base::is.data.frame(data) 11. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 12. ├─base::as.data.frame(x[[i]], optional = TRUE) 13. └─base::as.data.frame.table(x[[i]], optional = TRUE) 14. ├─base::eval(ex) 15. │ └─base::eval(ex) 16. └─base::data.frame(...) 17. ├─base::as.data.frame(x[[i]], optional = TRUE) 18. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:314:3'): data_tabulate print, collapse groups ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(...) 2. └─datawizard:::data_tabulate.grouped_df(...) 3. ├─datawizard::data_tabulate(...) 4. └─datawizard:::data_tabulate.data.frame(...) 5. └─base::lapply(...) 6. └─datawizard (local) FUN(X[[i]], ...) 7. ├─datawizard::data_tabulate(...) 8. └─datawizard:::data_tabulate.default(...) 9. ├─datawizard::data_rename(...) 10. │ └─base::is.data.frame(data) 11. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 12. ├─base::as.data.frame(x[[i]], optional = TRUE) 13. └─base::as.data.frame.table(x[[i]], optional = TRUE) 14. ├─base::eval(ex) 15. │ └─base::eval(ex) 16. └─base::data.frame(...) 17. ├─base::as.data.frame(x[[i]], optional = TRUE) 18. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:322:3'): data_tabulate print, collapse groups, drop levels ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(...) 2. └─datawizard:::data_tabulate.grouped_df(...) 3. ├─datawizard::data_tabulate(...) 4. └─datawizard:::data_tabulate.data.frame(...) 5. └─base::lapply(...) 6. └─datawizard (local) FUN(X[[i]], ...) 7. ├─datawizard::data_tabulate(...) 8. └─datawizard:::data_tabulate.default(...) 9. ├─datawizard::data_rename(...) 10. │ └─base::is.data.frame(data) 11. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 12. ├─base::as.data.frame(x[[i]], optional = TRUE) 13. └─base::as.data.frame.table(x[[i]], optional = TRUE) 14. ├─base::eval(ex) 15. │ └─base::eval(ex) 16. └─base::data.frame(...) 17. ├─base::as.data.frame(x[[i]], optional = TRUE) 18. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:334:3'): data_tabulate drop levels ───────────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(x, drop_levels = FALSE) at test-data_tabulate.R:334:3 2. └─datawizard:::data_tabulate.default(x, drop_levels = FALSE) 3. ├─datawizard::data_rename(...) 4. │ └─base::is.data.frame(data) 5. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 6. ├─base::as.data.frame(x[[i]], optional = TRUE) 7. └─base::as.data.frame.table(x[[i]], optional = TRUE) 8. ├─base::eval(ex) 9. │ └─base::eval(ex) 10. └─base::data.frame(...) 11. ├─base::as.data.frame(x[[i]], optional = TRUE) 12. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:347:3'): data_tabulate regex ─────────────────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_identical(...) at test-data_tabulate.R:347:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─datawizard::data_tabulate(mtcars, select = "arb", regex = TRUE) 5. └─datawizard:::data_tabulate.data.frame(...) 6. └─base::lapply(...) 7. └─datawizard (local) FUN(X[[i]], ...) 8. ├─datawizard::data_tabulate(...) 9. └─datawizard:::data_tabulate.default(...) 10. ├─datawizard::data_rename(...) 11. │ └─base::is.data.frame(data) 12. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 13. ├─base::as.data.frame(x[[i]], optional = TRUE) 14. └─base::as.data.frame.table(x[[i]], optional = TRUE) 15. ├─base::eval(ex) 16. │ └─base::eval(ex) 17. └─base::data.frame(...) 18. ├─base::as.data.frame(x[[i]], optional = TRUE) 19. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:361:3'): data_tabulate exclude/include missing values ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(efc$c172code) at test-data_tabulate.R:361:3 2. └─datawizard:::data_tabulate.default(efc$c172code) 3. ├─datawizard::data_rename(...) 4. │ └─base::is.data.frame(data) 5. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 6. ├─base::as.data.frame(x[[i]], optional = TRUE) 7. └─base::as.data.frame.table(x[[i]], optional = TRUE) 8. ├─base::eval(ex) 9. │ └─base::eval(ex) 10. └─base::data.frame(...) 11. ├─base::as.data.frame(x[[i]], optional = TRUE) 12. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:704:3'): data_tabulate, cross tables, modify structure ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(x, "c172code") at test-data_tabulate.R:704:3 2. └─datawizard:::data_tabulate.grouped_df(x, "c172code") 3. ├─datawizard::data_tabulate(...) 4. └─datawizard:::data_tabulate.data.frame(...) 5. └─base::lapply(...) 6. └─datawizard (local) FUN(X[[i]], ...) 7. ├─datawizard::data_tabulate(...) 8. └─datawizard:::data_tabulate.default(...) 9. ├─datawizard::data_rename(...) 10. │ └─base::is.data.frame(data) 11. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 12. ├─base::as.data.frame(x[[i]], optional = TRUE) 13. └─base::as.data.frame.table(x[[i]], optional = TRUE) 14. ├─base::eval(ex) 15. │ └─base::eval(ex) 16. └─base::data.frame(...) 17. ├─base::as.data.frame(x[[i]], optional = TRUE) 18. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:832:3'): data_tabulate, as.data.frame, frequency tables ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(mtcars$cyl) at test-data_tabulate.R:832:3 2. └─datawizard:::data_tabulate.default(mtcars$cyl) 3. ├─datawizard::data_rename(...) 4. │ └─base::is.data.frame(data) 5. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 6. ├─base::as.data.frame(x[[i]], optional = TRUE) 7. └─base::as.data.frame.table(x[[i]], optional = TRUE) 8. ├─base::eval(ex) 9. │ └─base::eval(ex) 10. └─base::data.frame(...) 11. ├─base::as.data.frame(x[[i]], optional = TRUE) 12. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:931:3'): data_tabulate, table methods ────────── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─datawizard::data_tabulate(mtcars$cyl) at test-data_tabulate.R:931:3 2. └─datawizard:::data_tabulate.default(mtcars$cyl) 3. ├─datawizard::data_rename(...) 4. │ └─base::is.data.frame(data) 5. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 6. ├─base::as.data.frame(x[[i]], optional = TRUE) 7. └─base::as.data.frame.table(x[[i]], optional = TRUE) 8. ├─base::eval(ex) 9. │ └─base::eval(ex) 10. └─base::data.frame(...) 11. ├─base::as.data.frame(x[[i]], optional = TRUE) 12. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ── Error ('test-data_tabulate.R:1005:3'): data_tabulate, table methods, only warn if necessary ── Error in `as.data.frame.integer(x[[i]], optional = TRUE)`: row names contain missing values Backtrace: ▆ 1. ├─testthat::expect_message(as.table(data_tabulate(efc$c172code))) at test-data_tabulate.R:1005:3 2. │ └─testthat:::expect_condition_matching_(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. ├─base::as.table(data_tabulate(efc$c172code)) 8. ├─datawizard::data_tabulate(efc$c172code) 9. └─datawizard:::data_tabulate.default(efc$c172code) 10. ├─datawizard::data_rename(...) 11. │ └─base::is.data.frame(data) 12. └─base::data.frame(freq_table, stringsAsFactors = FALSE) 13. ├─base::as.data.frame(x[[i]], optional = TRUE) 14. └─base::as.data.frame.table(x[[i]], optional = TRUE) 15. ├─base::eval(ex) 16. │ └─base::eval(ex) 17. └─base::data.frame(...) 18. ├─base::as.data.frame(x[[i]], optional = TRUE) 19. └─base::as.data.frame.integer(x[[i]], optional = TRUE) [ FAIL 22 | WARN 0 | SKIP 82 | PASS 1984 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.3.1
Check: examples
Result: ERROR Running examples in 'datawizard-Ex.R' failed The error most likely occurred in: > ### Name: as.prop.table > ### Title: Convert a crosstable to a frequency or a propensity table > ### Aliases: as.prop.table as.prop.table.datawizard_crosstab > ### as.data.frame.datawizard_tables as.table.datawizard_table > > ### ** Examples > > data(efc) > > # Some cross tabulation > cross <- data_tabulate(efc, select = "e42dep", by = "c172code", proportions = "row") > cross e42dep | low level of education | intermediate level of education -------+------------------------+-------------------------------- 1 | 0 (0.0%) | 2 (100.0%) 2 | 0 (0.0%) | 4 (100.0%) 3 | 4 (14.3%) | 16 (57.1%) 4 | 4 (6.3%) | 42 (66.7%) <NA> | 0 (0.0%) | 2 (66.7%) -------+------------------------+-------------------------------- Total | 8 | 66 e42dep | high level of education | <NA> | Total -------+-------------------------+-----------+------ 1 | 0 (0.0%) | 0 (0.0%) | 2 2 | 0 (0.0%) | 0 (0.0%) | 4 3 | 6 (21.4%) | 2 (7.1%) | 28 4 | 10 (15.9%) | 7 (11.1%) | 63 <NA> | 0 (0.0%) | 1 (33.3%) | 3 -------+-------------------------+-----------+------ Total | 16 | 10 | 100 > > # Convert to a propensity table > as.prop.table(cross) Removing NA values from frequency table. [[1]] low level of education intermediate level of education 1 0.00000000 1.00000000 2 0.00000000 1.00000000 3 0.14285714 0.57142857 4 0.06349206 0.66666667 high level of education 1 0.00000000 2 0.00000000 3 0.21428571 4 0.15873016 > > # Convert to data.frame > result <- data_tabulate(efc, "c172code", by = "e16sex") > as.data.frame(result) var table 1 c172code c(1, 2, .... > as.data.frame(result)$table [[1]] c172code male female NA 1 1 5 3 0 2 2 32 34 0 3 3 4 12 0 4 <NA> 5 5 0 > as.data.frame(result, add_total = TRUE)$table [[1]] c172code male female <NA> Total 1 1 5 3 0 8 2 2 32 34 0 66 3 3 4 12 0 16 4 <NA> 5 5 0 10 5 Total 46 54 0 100 > > # Convert to a table that can be passed to chisq.test() > > out <- data_tabulate(efc, "c172code", by = "e16sex") > # we need to simplify the output, else we get a list of tables > tbl <- as.table(out, simplify = TRUE) Removing NA values from frequency table. > tbl male female 1 5 3 2 32 34 3 4 12 > suppressWarnings(chisq.test(tbl)) Pearson's Chi-squared test data: tbl X-squared = 3.8802, df = 2, p-value = 0.1437 > > # apply chisq.test to each table > out <- data_tabulate(efc, c("c172code", "e16sex")) Error in as.data.frame.integer(x[[i]], optional = TRUE) : row names contain missing values Calls: data_tabulate ... data.frame -> as.data.frame -> as.data.frame.integer Execution halted Flavor: r-devel-windows-x86_64

Version: 1.3.1
Check: tests
Result: ERROR Running 'testthat.R' [160s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(datawizard) > > test_check("datawizard") Starting 2 test processes. Saving _problems/test-data_tabulate-3.R Saving _problems/test-data_tabulate-25.R Saving _problems/test-data_tabulate-48.R Saving _problems/test-data_tabulate-60.R Saving _problems/test-data_tabulate-71.R Saving _problems/test-data_tabulate-115.R Saving _problems/test-data_tabulate-197.R Saving _problems/test-data_tabulate-217.R Saving _problems/test-data_tabulate-223.R Saving _problems/test-data_tabulate-230.R Saving _problems/test-data_tabulate-238.R Saving _problems/test-data_tabulate-245.R Saving _problems/test-data_tabulate-308.R Saving _problems/test-data_tabulate-316.R Saving _problems/test-data_tabulate-329.R Saving _problems/test-data_tabulate-334.R Saving _problems/test-data_tabulate-350.R Saving _problems/test-data_tabulate-361.R Saving _problems/test-data_tabulate-704.R Saving _problems/test-data_tabulate-832.R Saving _problems/test-data_tabulate-931.R Saving _problems/test-data_tabulate-1005.R > test-describe_distribution.R: Bootstrapping confidence intervals using 100 iterations, please be > test-describe_distribution.R: patient... > test-describe_distribution.R: For more stable intervals, increase the number of `iterations`, but note > test-describe_distribution.R: that this can also increase the computation time significantly. > test-describe_distribution.R: Bootstrapping confidence intervals using 100 iterations, please be > test-describe_distribution.R: patient... > test-describe_distribution.R: For more stable intervals, increase the number of `iterations`, but note > test-describe_distribution.R: that this can also increase the computation time significantly. > test-describe_distribution.R: Bootstrapping confidence intervals using 100 iterations, please be > test-describe_distribution.R: patient... > test-describe_distribution.R: For more stable intervals, increase the number of `iterations`, but note > test-describe_distribution.R: that this can also increase the computation time significantly. > test-standardize-data.R: Error: ! testthat subprocess exited in file 'test-standardize-data.R'. Caused by error: ! R session crashed with exit code -1073741819 Backtrace: ▆ 1. └─testthat::test_check("datawizard") 2. └─testthat::test_dir(...) 3. └─testthat:::test_files(...) 4. └─testthat:::test_files_parallel(...) 5. ├─withr::with_dir(...) 6. │ └─base::force(code) 7. ├─testthat::with_reporter(...) 8. │ └─base::tryCatch(...) 9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".") 13. └─queue$poll(Inf) 14. └─base::lapply(...) 15. └─testthat (local) FUN(X[[i]], ...) 16. └─private$handle_error(msg, i) 17. └─cli::cli_abort(...) 18. └─rlang::abort(...) Execution halted Flavor: r-devel-windows-x86_64

Package flir

Current CRAN status: ERROR: 1, OK: 12

Version: 0.6.0
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [10m] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(flir) Attaching package: 'flir' The following object is masked from 'package:utils': fix > > test_check("flir") Starting 2 test processes. > test-absolute_path.R: v Created './flir'. > test-absolute_path.R: i Use `add_new_rule()` to create a custom rule. > test-add_new_rule.R: v Created './flir'. > test-add_new_rule.R: i Use `add_new_rule()` to create a custom rule. > test-add_new_rule.R: v Created './flir/rules/custom/foobar.yml'. > test-add_new_rule.R: i Add "foobar" to 'flir/config.yml' to be able to use it. > test-add_new_rule.R: v Created './flir'. > test-add_new_rule.R: i Use `add_new_rule()` to create a custom rule. > test-add_new_rule.R: v Created './flir/rules/custom/foobar.yml'. > test-add_new_rule.R: v Created './flir'. > test-add_new_rule.R: i Use `add_new_rule()` to create a custom rule. > test-add_new_rule.R: v Created './flir/rules/custom/foobar.yml' and './flir/rules/custom/foobar2.yml'. > test-add_new_rule.R: i Add "foobar" and "foobar2" to 'flir/config.yml' to be able to use it. > test-config_yml.R: v Created './flir'. > test-config_yml.R: i Use `add_new_rule()` to create a custom rule. > test-config_yml.R: v Created './flir'. > test-config_yml.R: i Use `add_new_rule()` to create a custom rule. > test-config_yml.R: v Created './flir'. > test-config_yml.R: i Use `add_new_rule()` to create a custom rule. > test-config_yml.R: v Created './flir'. > test-config_yml.R: i Use `add_new_rule()` to create a custom rule. > test-config_yml.R: v Created './flir'. > test-config_yml.R: i Use `add_new_rule()` to create a custom rule. > test-config_yml.R: v Created './flir'. > test-config_yml.R: i Use `add_new_rule()` to create a custom rule. > test-config_yml.R: v Created './flir'. > test-config_yml.R: i Use `add_new_rule()` to create a custom rule. > test-config_yml.R: v Created './flir'. > test-config_yml.R: i Use `add_new_rule()` to create a custom rule. > test-config_yml.R: v Created './flir'. > test-config_yml.R: i Use `add_new_rule()` to create a custom rule. > test-custom_linters.R: v Created './flir'. > test-custom_linters.R: i Use `add_new_rule()` to create a custom rule. > test-config_yml.R: v Created './flir'. > test-config_yml.R: i Use `add_new_rule()` to create a custom rule. > test-custom_linters.R: v Created './flir'. > test-custom_linters.R: i Use `add_new_rule()` to create a custom rule. > test-config_yml.R: v Created './flir'. > test-config_yml.R: i Use `add_new_rule()` to create a custom rule. > test-config_yml.R: v Created './flir'. > test-config_yml.R: i Use `add_new_rule()` to create a custom rule. > test-config_yml.R: v Created './flir'. > test-config_yml.R: i Use `add_new_rule()` to create a custom rule. > test-export_new_rule.R: v Created './inst/flir/rules/foobar.yml'. > test-export_new_rule.R: v Created './inst/flir/rules/foobar2.yml'. > test-export_new_rule.R: v Created './inst/flir/rules/foobar.yml'. > test-export_new_rule.R: v Created './flir'. > test-export_new_rule.R: i Use `add_new_rule()` to create a custom rule. > test-export_new_rule.R: v Created './inst/flir/rules/foobar.yml' and './inst/flir/rules/foobar2.yml'. > test-path.R: v Created './flir'. > test-path.R: i Use `add_new_rule()` to create a custom rule. > test-setup_flir.R: v Created './flir'. > test-setup_flir.R: i Use `add_new_rule()` to create a custom rule. > test-setup_flir.R: v Created './flir'. > test-setup_flir.R: i Use `add_new_rule()` to create a custom rule. > test-vector_logic.R: Error: ! testthat subprocess exited in file 'test-vector_logic.R'. Caused by error: ! R session crashed with exit code -1073741819 Backtrace: ▆ 1. └─testthat::test_check("flir") 2. └─testthat::test_dir(...) 3. └─testthat:::test_files(...) 4. └─testthat:::test_files_parallel(...) 5. ├─withr::with_dir(...) 6. │ └─base::force(code) 7. ├─testthat::with_reporter(...) 8. │ └─base::tryCatch(...) 9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".") 13. └─queue$poll(Inf) 14. └─base::lapply(...) 15. └─testthat (local) FUN(X[[i]], ...) 16. └─private$handle_error(msg, i) 17. └─cli::cli_abort(...) 18. └─rlang::abort(...) Execution halted Flavor: r-oldrel-windows-x86_64

Package prompter

Current CRAN status: OK: 13

Package shinyfullscreen

Current CRAN status: OK: 13

Package spoiler

Current CRAN status: OK: 13