CRAN Package Check Results for Maintainer ‘Joelle Barido-Sottani <joelle.barido-sottani at m4x.org>’

Last updated on 2025-11-11 15:51:08 CET.

Package	ERROR	NOTE	OK
FossilSim	1		12
FossilSimShiny		2	11
ML.MSBD			13

Package FossilSim

Current CRAN status: ERROR: 1, OK: 12

Version: 2.4.2
Check: R code for possible problems
Result: NOTE fortify.fbdrange: no visible global function definition for ‘adjust_hclust_tip.edge.len’ Undefined global functions or variables: adjust_hclust_tip.edge.len Flavor: r-patched-linux-x86_64

Version: 2.4.2
Check: examples
Result: ERROR Running examples in ‘FossilSim-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: plot.fbdrange > ### Title: Plot oriented tree with stratigraphic ranges > ### Aliases: plot.fbdrange > > ### ** Examples > > tree_file <- system.file("extdata", "fbdrange.trees", package = "FossilSim") > fbdr <- get_fbdrange_from_file(tree_file) > p <- plot(fbdr, smart.labels = TRUE) Error in adjust_hclust_tip.edge.len(res, x) : could not find function "adjust_hclust_tip.edge.len" Calls: plot ... <Anonymous> -> ggplot.default -> fortify -> fortify.fbdrange Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed paleotree.record.to.fossils 4.65 0.069 5.268 Flavor: r-patched-linux-x86_64

Package FossilSimShiny

Current CRAN status: NOTE: 2, OK: 11

Version: 1.1.2
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘TreeSim’ ‘shinyjs’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package ML.MSBD

Current CRAN status: OK: 13