CRAN Package Check Results for Maintainer ‘Kyle Messier <kyle.messier at nih.gov>’

Last updated on 2025-01-30 16:48:53 CET.

Package	ERROR	NOTE	OK
amadeus		5	8
GeoTox	2		8

Package amadeus

Current CRAN status: NOTE: 5, OK: 8

Version: 1.2.3
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.2.0 because package code uses the pipe placeholder syntax added in R 4.2.0. File(s) using such syntax: ‘calculate_covariates.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Package GeoTox

Current CRAN status: ERROR: 2, OK: 8

Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘introduction.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26389 bytes Input file size = 26503 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20886 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20886 Output IDAT size = 20886 bytes (5503 bytes decrease) Output file size = 20964 bytes (5539 bytes = 20.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-2.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30087 bytes Input file size = 30201 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26572 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26572 Output IDAT size = 26572 bytes (3515 bytes decrease) Output file size = 26650 bytes (3551 bytes = 11.76% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-3.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38053 bytes Input file size = 38179 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32452 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32452 Output IDAT size = 32452 bytes (5601 bytes decrease) Output file size = 32530 bytes (5649 bytes = 14.80% decrease) --- re-building ‘package_data.Rmd’ using rmarkdown --- finished re-building ‘package_data.Rmd’ SUMMARY: processing the following file failed: ‘introduction.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘introduction.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26389 bytes Input file size = 26503 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20886 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20886 Output IDAT size = 20886 bytes (5503 bytes decrease) Output file size = 20964 bytes (5539 bytes = 20.90% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-2.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30087 bytes Input file size = 30201 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26572 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 26572 Output IDAT size = 26572 bytes (3515 bytes decrease) Output file size = 26650 bytes (3551 bytes = 11.76% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-devel/GeoTox.Rcheck/vign_test/GeoTox/vignettes/introduction_files/figure-html/unnamed-chunk-3-3.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 38053 bytes Input file size = 38179 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32452 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 32452 Output IDAT size = 32452 bytes (5601 bytes decrease) Output file size = 32530 bytes (5649 bytes = 14.80% decrease) --- re-building ‘package_data.Rmd’ using rmarkdown --- finished re-building ‘package_data.Rmd’ SUMMARY: processing the following file failed: ‘introduction.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc