CRAN Package Check Results for Maintainer ‘Luis Garcez <luisgarcez1 at gmail.com>’

Last updated on 2025-01-30 16:48:54 CET.

Package	ERROR	NOTE	OK
faersquarterlydata	1		12
long2lstmarray			13
qualitycontrol		10	3

Package faersquarterlydata

Current CRAN status: ERROR: 1, OK: 12

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [8s/9s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(faersquarterlydata) > > test_check("faersquarterlydata") Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml 1 out of 1 retrieving resources/1_ADR22Q1_example.xml saving resources/1_ADR22Q1_example.xml into cache: resources/cache/cache_xml.Rdata 1 out of 1 retrieving resources/1_ADR22Q1_example.xml Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 Retrieving drug/indication information: binding resources/test_zip_ex_dir/ASCII/DRUG22Q4.txt 1 out of 2 unzipping resources/xml_files/faers_xml_2012q4.zip unzipping resources/ascii_files//faers_ascii_2022Q4.zip [ FAIL 4 | WARN 36 | SKIP 0 | PASS 30 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-read_func_ascii.R:23:3'): retrieve_faersascii ────────────────── <dplyr:::mutate_error/rlang_error/error/condition> Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`. Caused by error in `arrange_date()`: ! string contains letters Backtrace: ▆ 1. ├─testthat::expect_true(...) at test-read_func_ascii.R:23:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─faersquarterlydata::retrieve_faersascii(...) 5. │ └─... %>% ... 6. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.))) 7. │ ├─dplyr::mutate(.tbl, !!!funs) 8. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs) 9. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by) 10. │ ├─base::withCallingHandlers(...) 11. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns) 12. │ └─mask$eval_all_mutate(quo) 13. │ └─dplyr (local) eval() 14. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt) 15. │ └─rlang::eval_bare(`_quo`, base::parent.frame()) 16. ├─rlang (local) arrange_date(.) 17. ├─faersquarterlydata::arrange_date(.) 18. │ └─base::stop("string contains letters") 19. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.))) 20. └─dplyr (local) h(simpleError(msg, call)) 21. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-read_func_ascii.R:49:3'): unify_tabular_ascii ────────────────── <dplyr:::mutate_error/rlang_error/error/condition> Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`. Caused by error in `arrange_date()`: ! string contains letters Backtrace: ▆ 1. ├─faersquarterlydata::retrieve_faersascii(...) at test-read_func_ascii.R:49:3 2. │ └─... %>% ... 3. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.))) 4. │ ├─dplyr::mutate(.tbl, !!!funs) 5. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs) 6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by) 7. │ ├─base::withCallingHandlers(...) 8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns) 9. │ └─mask$eval_all_mutate(quo) 10. │ └─dplyr (local) eval() 11. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt) 12. │ └─rlang::eval_bare(`_quo`, base::parent.frame()) 13. ├─rlang (local) arrange_date(.) 14. ├─faersquarterlydata::arrange_date(.) 15. │ └─base::stop("string contains letters") 16. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.))) 17. └─dplyr (local) h(simpleError(msg, call)) 18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-ror.R:22:3'): estimate_ror_bygroup ───────────────────────────── <dplyr:::mutate_error/rlang_error/error/condition> Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`. Caused by error in `arrange_date()`: ! string contains letters Backtrace: ▆ 1. ├─faersquarterlydata::retrieve_faersascii(ascii_dir = "resources/test_zip_ex_dir/ASCII") at test-ror.R:22:3 2. │ └─... %>% ... 3. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.))) 4. │ ├─dplyr::mutate(.tbl, !!!funs) 5. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs) 6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by) 7. │ ├─base::withCallingHandlers(...) 8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns) 9. │ └─mask$eval_all_mutate(quo) 10. │ └─dplyr (local) eval() 11. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt) 12. │ └─rlang::eval_bare(`_quo`, base::parent.frame()) 13. ├─rlang (local) arrange_date(.) 14. ├─faersquarterlydata::arrange_date(.) 15. │ └─base::stop("string contains letters") 16. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.))) 17. └─dplyr (local) h(simpleError(msg, call)) 18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) ── Error ('test-summary.R:3:3'): summary_faersdata ───────────────────────────── <dplyr:::mutate_error/rlang_error/error/condition> Error in `mutate(.tbl, !!!funs)`: i In argument: `exp_dt = (structure(function (..., .x = ..1, .y = ..2, . = ..1) ...`. Caused by error in `arrange_date()`: ! string contains letters Backtrace: ▆ 1. ├─faersquarterlydata::retrieve_faersascii(ascii_dir = "resources/test_zip_ex_dir/ASCII") at test-summary.R:3:3 2. │ └─... %>% ... 3. ├─dplyr::mutate_at(., vars(ends_with("_dt")), list(~arrange_date(.))) 4. │ ├─dplyr::mutate(.tbl, !!!funs) 5. │ └─dplyr:::mutate.data.frame(.tbl, !!!funs) 6. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by) 7. │ ├─base::withCallingHandlers(...) 8. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns) 9. │ └─mask$eval_all_mutate(quo) 10. │ └─dplyr (local) eval() 11. ├─faersquarterlydata (local) `<inln_cl_>`(exp_dt) 12. │ └─rlang::eval_bare(`_quo`, base::parent.frame()) 13. ├─rlang (local) arrange_date(.) 14. ├─faersquarterlydata::arrange_date(.) 15. │ └─base::stop("string contains letters") 16. └─base::.handleSimpleError(`<fn>`, "string contains letters", base::quote(arrange_date(.))) 17. └─dplyr (local) h(simpleError(msg, call)) 18. └─rlang::abort(message, class = error_class, parent = parent, call = error_call) [ FAIL 4 | WARN 36 | SKIP 0 | PASS 30 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Package long2lstmarray

Current CRAN status: OK: 13

Package qualitycontrol

Current CRAN status: NOTE: 10, OK: 3

Version: 0.1.0
Check: Rd files
Result: NOTE checkRd: (-1) als_data.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:17: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:18: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:19: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data_qc_mapping.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data_qc_mapping.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) als_data_qc_mapping.Rd:13: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64