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CRAN Package Check Results for Maintainer ‘Susanna Marquez <susanna.marquez at yale.edu>’

Last updated on 2026-04-15 05:53:38 CEST.

Package ERROR OK
alakazam 1 13
scoper 1 13
shazam 1 13
tigger 1 13

Package alakazam

Current CRAN status: ERROR: 1, OK: 13

Version: 1.4.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'AminoAcids-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `9cee2cf57e32f69f3cc62b25558945a2b7a28cda.pdf' not found: using draft setting. Error: processing vignette 'AminoAcids-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/AminoAcids-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See AminoAcids-Vignette.log for more info. --- failed re-building 'AminoAcids-Vignette.Rmd' --- re-building 'Diversity-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `d6c8afb002fb72ee9e075d79ba19804ad082737f.pdf' not found: using draft setting. Error: processing vignette 'Diversity-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/Diversity-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Diversity-Vignette.log for more info. --- failed re-building 'Diversity-Vignette.Rmd' --- re-building 'Fastq-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `0ccd3a4fe0e1faa910229173e625ade01595f86b.pdf' not found: using draft setting. Error: processing vignette 'Fastq-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/Fastq-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Fastq-Vignette.log for more info. --- failed re-building 'Fastq-Vignette.Rmd' --- re-building 'Files-Vignette.Rmd' using rmarkdown --- finished re-building 'Files-Vignette.Rmd' --- re-building 'GeneUsage-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `d4d652ae13ea020fbce508f7dea4402b8de8650e.pdf' not found: using draft setting. Error: processing vignette 'GeneUsage-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/alakazam.Rcheck/vign_test/alakazam/vignettes/GeneUsage-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See GeneUsage-Vignette.log for more info. --- failed re-building 'GeneUsage-Vignette.Rmd' SUMMARY: processing the following files failed: 'AminoAcids-Vignette.Rmd' 'Diversity-Vignette.Rmd' 'Fastq-Vignette.Rmd' 'GeneUsage-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64

Package scoper

Current CRAN status: ERROR: 1, OK: 13

Version: 1.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Scoper-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `36b9227d8c02a35dbf0f96bb1356526c5cc06324.pdf' not found: using draft setting. Error: processing vignette 'Scoper-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/scoper.Rcheck/vign_test/scoper/vignettes/Scoper-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Scoper-Vignette.log for more info. --- failed re-building 'Scoper-Vignette.Rmd' SUMMARY: processing the following file failed: 'Scoper-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64

Package shazam

Current CRAN status: ERROR: 1, OK: 13

Version: 1.3.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Baseline-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `0d9dfea3cb738add7846f4898142eaed0bd54d25.pdf' not found: using draft setting. Error: processing vignette 'Baseline-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Baseline-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Baseline-Vignette.log for more info. --- failed re-building 'Baseline-Vignette.Rmd' --- re-building 'DistToNearest-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `89a1c966c103cd317662b3dd71dbbb9c053cc46c.pdf' not found: using draft setting. Error: processing vignette 'DistToNearest-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/DistToNearest-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See DistToNearest-Vignette.log for more info. --- failed re-building 'DistToNearest-Vignette.Rmd' --- re-building 'Mutation-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `3c75c051033aa9cf2b76e3d15da43e1ae4fdaab1.pdf' not found: using draft setting. Error: processing vignette 'Mutation-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Mutation-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Mutation-Vignette.log for more info. --- failed re-building 'Mutation-Vignette.Rmd' --- re-building 'Shmulate-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `dd37e2195eed2b14c8f52e00cc9b3e95e82dabff.pdf' not found: using draft setting. Error: processing vignette 'Shmulate-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Shmulate-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Shmulate-Vignette.log for more info. --- failed re-building 'Shmulate-Vignette.Rmd' --- re-building 'Targeting-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `6f23b42fe2b2cb0102c793e0963ffe32b18fffb3.pdf' not found: using draft setting. Error: processing vignette 'Targeting-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/shazam.Rcheck/vign_test/shazam/vignettes/Targeting-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Targeting-Vignette.log for more info. --- failed re-building 'Targeting-Vignette.Rmd' SUMMARY: processing the following files failed: 'Baseline-Vignette.Rmd' 'DistToNearest-Vignette.Rmd' 'Mutation-Vignette.Rmd' 'Shmulate-Vignette.Rmd' 'Targeting-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64

Package tigger

Current CRAN status: ERROR: 1, OK: 13

Version: 1.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Tigger-Vignette.Rmd' using rmarkdown ! Package pdftex.def Error: File `bc517872682c6218f33961609522021acf0c2833.pdf' not found: using draft setting. Error: processing vignette 'Tigger-Vignette.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/tigger.Rcheck/vign_test/tigger/vignettes/Tigger-Vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Tigger-Vignette.log for more info. --- failed re-building 'Tigger-Vignette.Rmd' SUMMARY: processing the following file failed: 'Tigger-Vignette.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64

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