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Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles. The method was originally implemented by Murray Christian and Ben Murrell in the following immunology study: Ma et al. (2021) <doi:10.1126/sciimmunol.abg6356>.
Version: | 1.2.4 |
Depends: | R (≥ 4.1.0) |
Imports: | assertthat, dplyr, ggforce, ggplot2, hash, lifecycle, methods, Rcpp, rlang, Seurat, SeuratObject |
LinkingTo: | Rcpp |
Suggests: | cowplot, covr, knitr, rmarkdown, sf, spelling, testthat (≥ 3.0.0), vdiffr |
Published: | 2024-11-18 |
DOI: | 10.32614/CRAN.package.APackOfTheClones |
Author: | Qile Yang [cre, aut, cph] |
Maintainer: | Qile Yang <qile.yang at berkeley.edu> |
BugReports: | https://github.com/Qile0317/APackOfTheClones/issues |
License: | MIT + file LICENSE |
URL: | https://qile0317.github.io/APackOfTheClones/, https://github.com/Qile0317/APackOfTheClones, https://joss.theoj.org/papers/10.21105/joss.06868 |
NeedsCompilation: | yes |
Language: | en-US |
Citation: | APackOfTheClones citation info |
CRAN checks: | APackOfTheClones results |
Package source: | APackOfTheClones_1.2.4.tar.gz |
Windows binaries: | r-devel: APackOfTheClones_1.2.4.zip, r-release: APackOfTheClones_1.2.4.zip, r-oldrel: APackOfTheClones_1.2.4.zip |
macOS binaries: | r-release (arm64): APackOfTheClones_1.2.4.tgz, r-oldrel (arm64): APackOfTheClones_1.2.4.tgz, r-release (x86_64): APackOfTheClones_1.2.4.tgz, r-oldrel (x86_64): APackOfTheClones_1.2.4.tgz |
Old sources: | APackOfTheClones archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.